Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3761 104 3e-17 >seq3761 Length=42113 Score = 104 bits (114), Expect = 3e-17 Identities = 249/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 10786 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 10845 ||||||||| || ||||| || | | || || || | ||||| ||||| || || Sbjct 23959 ACGATCAAAACGTCCTGGACGTAATAATGCTGGATCTAGCACATCAACACGGTTAGTTGC 23900 Query 10846 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAG-AGTTGAT 10904 || || | || || || | | ||||| |||||||| || | | || | ||| | Sbjct 23899 AGCAATAATAATAATACCACTGTTTGATTCAAACCCATCCATTTC-GACTAGCATTTGGT 23841 Query 10905 TGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCA-CTGCGTTGCTTACCG 10963 | | |||||| ||||||||||||| | || | | |||| | |||| || Sbjct 23840 TTAAGGTTTGCTCGCGTTCATCATGACCAC-CAGAAAAACCGCCTCCCCGTTTTCGTCCA 23782 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023 ||||| ||||||||||| || |||| |||||||| || || ||| || |||| Sbjct 23781 ACGGCATCAATTTCATCAATAAAAATAATACACGGCGCATGTTTACGTGCTTGAGCAAAC 23722 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAA 11083 ||||| || |||| ||| || ||||| ||||||||||| ||||||| | | ||| Sbjct 23721 ATATCACGTACTCGAGAGGCCCCTACACCAACAAACATTTCAACAAAATCAGAACCTGAA 23662 Query 11084 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 11142 || | | ||| || || || | |||||| || |||||| || | ||||| || || Sbjct 23661 -ATCGTAAAGAAAGGAACATTTGCTTCACCAGCAATGGCTTTAGCCAATAGGGTTTTACC 23603 Query 11143 CGTCCCAGG 11151 ||| || || Sbjct 23602 CGTACCTGG 23594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597312091391720