Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq791 111 2e-19 seq102 111 2e-19 seq1334 107 2e-18 seq672 102 9e-17 seq739 93.3 5e-14 seq503 89.7 6e-13 seq92 86.0 7e-12 >seq791 Length=95952 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||||||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 70810 AAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 70869 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 70870 TGACCACTATACTACCGAGGA 70890 >seq102 Length=5466090 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||||||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 5247278 AAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5247219 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 5247218 TGACCACTATACTACCGAGGA 5247198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5246369 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTG 5246310 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 5246309 TACTAACGAGGATT 5246296 >seq1334 Length=405816 Score = 107 bits (118), Expect = 2e-18 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 180755 AAAAAATATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 180814 Query 57058 TCACCACTATACTACCGAGGATTGAAT 57084 | |||||||||||||||||||||| || Sbjct 180815 TGACCACTATACTACCGAGGATTGCAT 180841 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 182041 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 182100 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 182101 ATACTACCGAGGA 182113 >seq672 Length=307416 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || || ||||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 52132 AAGAAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 52191 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 52192 TGACCACTATACTACCGAGGA 52212 >seq739 Length=1399493 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| || ||||| | |||| ||| || || || || ||||| | ||||| | | || Sbjct 8186 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 8127 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 |||||||| || ||||| || || | ||||||||||| | || | | ||| ||||| Sbjct 8126 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 8067 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| |||| | || | || | | ||||| | ||| || || | ||||||| Sbjct 8066 C-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGG 8008 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || || || || ||||||||||| |||||| Sbjct 8007 TTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| || ||||| | ||| ||| || ||||| || ||||| | ||||| | | || Sbjct 7244 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 7185 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 ||||| || || ||||| || || | ||||||||||| | || | | ||| ||||| Sbjct 7184 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7125 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| |||| | || | || | | ||||| | ||| || || | || |||| Sbjct 7124 C-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGG 7066 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || || || || ||||||||||| |||||| Sbjct 7065 TTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7031 >seq503 Length=216272 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | || | ||||| || |||||||| ||||||||||||| Sbjct 162318 CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAG 162259 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || || ||||| ||||| || || | || || ||||| | || Sbjct 162258 AGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAGGA 162199 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || |||| | ||| |||||| ||| | | | | ||| ||| | ||| || Sbjct 162198 ATTCCTTCTTTGT-CTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAAC 162140 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || || ||||| || || |||||||| Sbjct 162139 TTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 >seq92 Length=412666 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 60240 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 60181 Query 57066 ATACTACCGAGGATT 57080 ||||| |||||||| Sbjct 60180 GTACTAACGAGGATT 60166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543175053500560