Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq739 125 7e-24 seq503 123 2e-23 seq129 105 7e-18 seq2682 100 3e-16 >seq739 Length=1399493 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||| | |||| ||| | ||| || ||||| |||||||| ||||||| Sbjct 7030 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 6971 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| ||||| ||||| ||| | || | ||||||||||| |||||| Sbjct 6970 AGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 6911 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| ||||| | | || ||||| ||| ||| | ||| ||| || || || Sbjct 6910 ATACCTTCTTTGTCTTGGA-TCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAAC 6852 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | ||| | || || || || || || || ||||| || ||||| || Sbjct 6851 TTCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTT 6801 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||| | |||| ||| | ||| || ||||| |||||||| ||||||| Sbjct 7258 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 7199 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| || || ||||| ||| | || | ||||||||||| |||||| Sbjct 7198 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7139 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| || || ||||| ||| ||| ||| | ||| ||| || || ||| Sbjct 7138 ATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACT 7079 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || || | |||||||| || || |||||| Sbjct 7078 TCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7031 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||| | |||| ||| | ||| || ||||| |||||||| ||||||| Sbjct 7486 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 7427 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| || || ||||| ||| | || | ||||||||||| |||||| Sbjct 7426 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7367 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || || ||| ||| ||| | ||| ||| || || ||| Sbjct 7366 ATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACT 7307 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || || | ||||| || || || |||||| Sbjct 7306 TCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7259 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||| | |||| ||| | ||| || ||||| || ||||| ||||||| Sbjct 7714 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAA 7655 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| || || ||||| ||| | || | ||||||||||| |||||| Sbjct 7654 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7595 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || || ||| ||| ||| | ||| ||| || || ||| Sbjct 7594 ATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACT 7535 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || || | ||||| || || || |||||| Sbjct 7534 TCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7487 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | |||| ||| | || || ||||| || ||||| ||||||| Sbjct 8200 CCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAA 8141 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| ||||| ||||| ||| | || | ||||||||||| |||||| Sbjct 8140 AGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 8081 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| || || ||||| ||| ||| ||| | ||| ||| || || ||| Sbjct 8080 ATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACT 8021 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || || | |||||||| || || |||||| Sbjct 8020 TCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | |||| ||| | || || ||||| || ||||| ||||||| Sbjct 7942 CCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAA 7883 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| || || ||||| ||| | || | ||||||||||| |||||| Sbjct 7882 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7823 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || || ||| ||| ||| | ||| ||| || || ||| Sbjct 7822 ATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACT 7763 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || || | ||||| || || || |||||| Sbjct 7762 TCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7715 >seq503 Length=216272 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||| ||||| || |||||||| | || |||||| | || Sbjct 162304 AAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAGAGTGTGCGCCCATC 162245 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| ||||| || ||| | || | | || ||||| ||||||||||||||||| || Sbjct 162244 TTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAGGAATTCCTTCTTTGTC 162185 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| |||||| || | ||||| || || ||||| | || | || Sbjct 162184 TTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAACTTCAAGTGTGATAGT 162125 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || |||||||||||||| Sbjct 162124 TTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || ||||| || |||||||||||||||| | ||||| | || Sbjct 161093 AAGAACAAGGTGGAGAGTTGATTCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATC 161034 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || || ||| |||| | | ||| || || || ||||||||||| || || Sbjct 161033 TTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATC 160974 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| |||||| || | || || || || ||||| | || | || Sbjct 160973 TTGAATTTTTGCTTTTACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGT 160914 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || |||||||||||||| Sbjct 160913 TTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 160881 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| |||||||| |||||||| || || |||| | ||||| |||| Sbjct 160865 AAGAACAAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTC 160806 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | | ||| || ||||| ||||| |||||||| || Sbjct 160805 TTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATC 160746 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || || ||||||| ||||| || Sbjct 160745 CTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGT 160686 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | || || ||||||||||||||| Sbjct 160685 TTTTCCTGTAAGGGTCTTGACGAAAATTTGCATT 160652 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||||||||||||||||| || || |||| | ||||| |||| Sbjct 161848 AAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTC 161789 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | | ||| || || || ||||| |||||||| || Sbjct 161788 TTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATC 161729 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || || ||||| | ||||| || Sbjct 161728 CTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGT 161669 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||||| |||||||||||| Sbjct 161668 TTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 161635 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||||||||||||||||| || || |||| | ||||| |||| Sbjct 162076 AAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTC 162017 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | | ||| || || || ||||| |||||||| || Sbjct 162016 TTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATC 161957 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || || ||||||| ||||| || Sbjct 161956 CTGAATCTTGGCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGT 161897 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || |||||||||||||| Sbjct 161896 TTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 161864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| |||||||| || ||||| |||||||||| | ||||| | || Sbjct 162540 AAGAACAAGGTGAAGAGTCGATTCCTTCTGAATATTGTAATCTGATAGTGTGCGTCCATC 162481 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG--------GAATTCCT 64342 ||| || || || || ||| |||| | | ||| || || || | |||| ||| Sbjct 162480 TTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCCGGCGATCTGGCGGAATACCT 162421 Query 64343 TCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACA 64402 ||||| || || || || ||| ||| || | || || || |||||||||| | Sbjct 162420 TCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGA 162361 Query 64403 GTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || || || || | |||||||| |||||||||||| Sbjct 162360 GTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162319 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || |||||||| || || || | | ||||| |||| Sbjct 162768 AAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTC 162709 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | || || || || | || | | ||| || ||||| ||||| |||||||| || Sbjct 162708 CTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATC 162649 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || |||||||||| ||||| || Sbjct 162648 CTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGT 162589 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | |||||||| |||||||||||| Sbjct 162588 TTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162555 >seq129 Length=1828789 Score = 105 bits (116), Expect = 7e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||| || ||||||| | || || | ||||| | ||||| || ||| ||| Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || || ||||| || || |||||||||||||| || || ||||| |||||| | Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||| || || ||||| | || | ||| || || ||||||||||| || | Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 64434 AAATTTGCATTTT 64446 | || ||||| || Sbjct 1158605 ATATCTGCATCTT 1158593 >seq2682 Length=416 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| |||||||| |||||||| || || |||| | ||||| |||| Sbjct 108 AAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTC 167 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | | ||| || ||||| ||||| |||||||| || Sbjct 168 TTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATC 227 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || || ||||||| ||||| || Sbjct 228 CTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGT 287 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || |||||||||||||| Sbjct 288 TTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499610080931960