Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_010583.1 Length=111382 Score E Sequences producing significant alignments: (Bits) Value seq3910 116 3e-21 seq3883 113 3e-20 seq1913 113 3e-20 >seq3910 Length=82658 Score = 116 bits (128), Expect = 3e-21 Identities = 189/269 (70%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 40206 TCGATGTAAACAGTACGCCCTTCAGGGAACTGATTTGGAAATTCTTTCTTCATCTGCTCG 40265 || || || | |||||| |||||||| |||||||||||| ||||| | | | | Sbjct 19218 TCAATATAGAGAGTACGACCTTCAGGCAACTGATTTGGATATTCTGCCAATAACGCATTA 19277 Query 40266 AACAGTTCAGAAGTAATTGAACGATCGGAGTTAATACGTAAACCATCATCTACCCACTTG 40325 || | | || | |||||||| ||||| | |||||||||||||||||||| || Sbjct 19278 AATAAAGGCGTGGTTTTAGAACGATCAGAGTTTACGCGTAAACCATCATCTACCCATTTT 19337 Query 40326 ACAGTAGGCGCTAGAACAATTACTAAATCGTAATGTTCTTCTTTT--GCAATTGCTGTAA 40383 || || ||||||| | ||| || ||||||| ||||| || | |||||||||| | Sbjct 19338 ACTGTTGGCGCTAAATAAATCACATAATCGTA--GTTCTCATTATGGGCAATTGCTGAGA 19395 Query 40384 CCACAGGGTTCTTACTAT---GTTCATAAAGTCTGTGGTAGAACTCAGTAATAAAAGCAT 40440 | | || ||||||| |||||| | | ||| || | ||||| || ||||||| Sbjct 19396 CAATTGG---ATTACTATAGCCTTCATATAAACGGTGATAATATTCAGTGATGAAAGCAT 19452 Query 40441 TTGTATCCACAAACATGATCTTATTTGCA 40469 ||||||| | ||| | || ||||| ||| Sbjct 19453 TTGTATCAATAAAAACAATTTTATTGGCA 19481 >seq3883 Length=158444 Score = 113 bits (124), Expect = 3e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 29158 ATTATATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAGTG 29217 |||| || | |||||||| || ||| |||| ||||| || ||||| || || | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 29218 CATTAAATCGAACAGCATAGCCAGAGACACGAATGGTCAACTGAGGGTATTTTTCAGGAT 29277 ||||| || || ||||| ||||| |||||||| || || || || || |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 29278 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTC 29337 || | |||||| || | |||||| |||| || || ||||| ||||||||||| | Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 29338 CCTCGAC 29344 | || || Sbjct 116384 CTTCAAC 116378 >seq1913 Length=212763 Score = 113 bits (124), Expect = 3e-20 Identities = 325/483 (67%), Gaps = 23/483 (5%) Strand=Plus/Plus Query 57738 ACTGAGAAAGAAGTGT-ACGATGCCTGTCAAGGTCTAGAATATGAAATCAATACGATGTT 57796 ||||| ||||| |||| | ||||| | |||| ||||||||||| |||||||| | Sbjct 32239 ACTGAAAAAGA-GTGTTATGATGCATTTCAATCGTTAGAATATGAAGTCAATACG--CTA 32295 Query 57797 CA-ACT-CTAATGGTCAGAGTCCATTTATTACCTTTGGGTTTGGTCTAGGAACTTCTTGG 57854 || ||| | ||||| |||| || ||| |||| ||||| |||||| |||| || |||| Sbjct 32296 CATACTGCGAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGG 32355 Query 57855 GAAGCACGTCTTGTACAGAAAGCAATCCTAGAAGTGCGTATGGATGGTTTGGGTATCAAT 57914 ||| |||| | | || || | ||| || |||||||| | |||||| || | ||| Sbjct 32356 GAATCACGCTTAATTCAAGAATCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAAT 32415 Query 57915 AAACGTACTGCTATCTTCCCTAAACTGGTATTTGTTCTGCGAGATGGCG-TAAACATGAA 57973 | || || | || |||||| | || |||| | |||||| | ||| ||| || Sbjct 32416 CATAAAACGGCAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGATGGGGTTAATCAT-AA 32474 Query 57974 GCCTGGAGATGTCAA--CTACGATATCAAGAAGTTGGCTATGAAGTGTACTGCCGAACGT 58031 ||| |||| || |||||| | || || || || | ||||| | || |||| Sbjct 32475 GCCAACAGATCAAAATTATACGAT-TAAACAA-TTAGCATTAGAGTGTGCCGCTAAACGA 32532 Query 58032 ATGTATCCTGACTAT-ATCAGCTATGATAAGGTTGTAGAAGTTACGGGAGACTACAAAGT 58090 ||||||||||| ||| | | |||||| | || || | || || ||| | ||| Sbjct 32533 ATGTATCCTGA-TATCCTTAATTATGATCAAGTGGTCAAGGTAACAGGATCATTTAAAAC 32591 Query 58091 CTCTATGGGCTGTCGTTCATTCCTGGCTG---CTGCGGAAGATGG--TGAAACTTC---- 58141 | | |||||||||||| ||| | | || || |||||||| | || ||| Sbjct 32592 CCCAATGGGCTGTCGTAGTTTCTTAGGTGTTTATGAAGAAGATGGGCAGCAAATTCATGA 32651 Query 58142 TGGTCGTAACAACTTAGGCGTTGTTTCCGTAAACCTTCCTCGAATCGCTATCGAAGCGGA 58201 ||| ||||| || ||||| || || |||| ||||||| || || || ||||| | Sbjct 32652 TGGGCGTAATAATTTAGGGGTAATTAGTTTAAATATTCCTCGTATTGCCATTGAAGCAAA 32711 Query 58202 AGG 58204 ||| Sbjct 32712 AGG 32714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356273460726257