Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq3267 208 3e-49 >seq3267 Length=144362 Score = 208 bits (230), Expect = 3e-49 Identities = 434/639 (68%), Gaps = 18/639 (3%) Strand=Plus/Plus Query 79 AAAGAGATAATCAAACAGGCGTGGTTGACGCGTTTTTACCAGTTTCGCCATCGCAATAGT 138 ||| ||||| ||||| || ||||| | ||||| | ||||| || || || || || Sbjct 96190 AAAAAGATAGTCAAAAAGTTTAGGTTGCTGAGTTTTAATTAGTTTGGCAATAGCGATTGT 96249 Query 139 GGCGTACACATCAGCCATCGCATCGTGGGC--GTTGCTATGTTCAATACCATTCGCTTTG 196 || || ||||| | ||| || || || || |||| |||||||||| ||| |||||| Sbjct 96250 CGCATAAACATCTGACATAGCGTCATGAGCATGTTG--ATGTTCAATATTATTGGCTTTG 96307 Query 197 GTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGTCA---TCATTTTCAGGCCAGTTTATT 253 ||||| |||||||| || ||||| | ||| ||| |||||| ||||| || || Sbjct 96308 GTTAAGTGCTCAAGACGGAAGCTAG---GACATTCATTTTCATTTAATGGCCAATTAATC 96364 Query 254 CCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAGTAAATCCCAGCGCGAGTTA 313 || || || | | || || ||||| | | ||||| ||||||||||| | || ||| Sbjct 96365 CCCTCAGGTCTTAATGCGTAACAGGCTCTTACTACATCGAGTAAATCCCATCTAGAATTA 96424 Query 314 TCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAAATTACGATAAAAAACGTTGCGTGTG 373 ||| ||| || |||| ||||| || |||||||| |||||||||| || || ||| Sbjct 96425 CCATTACACCAACTATAGGCATAAGGGTCATAGAAATTTCGATAAAAAATATTACGGGTG 96484 Query 374 ACTTCGTCGTCGAAACGCACATTGTTGTAGCCCAGAATACAGGTCTTCGGTACGGTAAAA 433 || || || || ||||| | |||||| ||||| || |||||||| || |||| |||| Sbjct 96485 ACCTCATCATCAAAACGAATATTGTTATAGCCTAGGATACAGGTATTTGGTAAATTAAAC 96544 Query 434 AGCGAGTG-AATACGGGCGGCAAATGCGGCTTC---GTTTTCTCCTTTCGCCCGAGCTTC 489 || ||| ||| | |||||| | || || | || |||| ||| Sbjct 96545 TGC-TGTGCAATTTGCTTAGCAAATTCAGCCTCACAAATCCCTTCTTT---TATTGCTCG 96600 Query 490 CTGCGGGGTAATACCGGTAATTAATACTGCTCCAGGCTGGGGTAAATAGTCATCCGCGGG 549 || || |||||||| ||||||||| || || | ||||| ||| |||| | || Sbjct 96601 TTGTGGCGTAATACCCGTAATTAATGTGGCAATGGGATCGGGTAGATAATCATTAGGAGG 96660 Query 550 CTTGCAGTAAAAGACTTCGGGTTCGCCGATGACATTGAATTCGTCATCGGTGCGAATGGC 609 ||| || | |||| |||| | || | ||| |||||| |||||| | || | Sbjct 96661 ACGGCAATACATGACTAGCGGTTTATCTATAATATTAAATTCGCTATCGGTTCTTATACC 96720 Query 610 TGCGAACTGTGCAGGGCGATCTAACGCGGGGTGCGTGCCAAAGGTTTCGTAATCGTGAAA 669 || || || | ||| ||| | || || | ||||||| ||||| ||||| ||||| Sbjct 96721 AGCAAATTGGGAAGGCTTATCATAAGCAGGATTGATGCCAAATGTTTCATAATCATGAAA 96780 Query 670 GAGGAAGGTAGGTTGCTTATCTGTGTCTGTCATTGTCTA 708 | || || ||||| || || || ||||||||| || Sbjct 96781 GTAAAATGTTGGTTGTAAATTTGCGTTTGTCATTGTTTA 96819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198732134923492