Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq739 143 2e-29 seq503 127 1e-24 seq129 107 1e-18 seq2682 102 6e-17 >seq739 Length=1399493 Score = 143 bits (158), Expect = 2e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 14943 ATGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTA 15002 ||| || || || || | ||| || |||||||| || || || ||||| || ||||| || Sbjct 7949 ATGGCTTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATA 7890 Query 15003 ATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTC 15062 ||| ||| |||| | ||||||| |||||||||||| | ||||||||||| ||||| Sbjct 7889 ATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTC 7830 Query 15063 GTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT 15122 ||||| || || ||||| || || || ||| | ||||| || || | Sbjct 7829 TGGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGC 7770 Query 15123 TTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || ||||||||||||||||| || || ||||| ||||| || ||||| Sbjct 7769 TTCTACTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7716 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| || |||||||| || || || ||||| || ||||| ||||| Sbjct 7258 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 7199 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||| |||||||||||| | ||||||||||| ||||| ||| Sbjct 7198 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7139 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| |||||| || ||| | ||||| || || ||| || Sbjct 7138 ATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACT 7079 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||||||||| || || || ||||||||||| || ||||| Sbjct 7078 TCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| || |||||||| || || || ||||| || ||||| ||||| Sbjct 7486 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 7427 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||| |||||||||||| | ||||||||||| ||||| ||| Sbjct 7426 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7367 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| || || || ||| | ||||| || || | |||||| Sbjct 7366 ATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACT 7307 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||||||||| || || ||||| ||||| || ||||| Sbjct 7306 TCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7260 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| || |||||||| || || || ||||| || ||||| ||||| Sbjct 7714 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAA 7655 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||| |||||||||||| | ||||||||||| ||||| ||| Sbjct 7654 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7595 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| || || || ||| | ||||| || || | |||||| Sbjct 7594 ATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACT 7535 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||||||||| || || ||||| ||||| || ||||| Sbjct 7534 TCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7488 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14947 CTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG 15006 || || || || | ||| || |||||||| || || || ||||| || ||||| ||||| Sbjct 8203 CTTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCT 8144 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 ||| |||| | ||||||| ||||||||||| | ||||||||||| ||||| Sbjct 8143 GAAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 8084 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||| || || ||||| |||||| || ||| | ||||| || || ||| Sbjct 8083 GGAATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCA 8024 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| |||||||| || || || ||||||||||| || ||||| Sbjct 8023 ACTTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| || |||||||| || || || ||||| || ||||| ||||| Sbjct 7030 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 6971 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||| ||||||||||| | ||||||||||| ||||| ||| Sbjct 6970 AGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 6911 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| || || ||| ||| | ||||| || || | ||| || Sbjct 6910 ATACCTTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAACT 6851 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||||| ||||| ||||| | || || || || || ||||| || Sbjct 6850 TCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTT 6801 >seq503 Length=216272 Score = 127 bits (140), Expect = 1e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || |||||||| |||||||| ||| | | | | ||||| | ||| Sbjct 162295 ATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAGAGTGTGCGCCCATCTTCAAGTTG 162236 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | |||||||| ||||||||||| ||||| |||||| Sbjct 162235 CTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAGGAATTCCTTCTTTGTCTTGAATTTT 162176 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||||||| ||||||| |||||| | ||| || || | || || ||||| ||||| Sbjct 162175 TGCTTTTACATTTTCTATCGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGT 162116 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||||||| Sbjct 162115 AAGGGTCTTCACGAAAATTTGCATA 162091 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14946 TCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC 15005 || |||||| || | | | ||| | |||||| || || || ||||| || || || || Sbjct 162786 TCGGCCACCACGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTC 162727 Query 15006 GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 | || | | |||| || |||||||| |||||| | ||||| | |||||| ||| Sbjct 162726 GGACAGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGG 162667 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||| ||||| || || ||| ||| || ||| |||| ||||| || | || Sbjct 162666 TGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTC 162607 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || ||||| || || || |||||||||||||||||||| Sbjct 162606 CACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCAT 162556 Score = 105 bits (116), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATT 15031 || || || || || || || ||||||||||| ||| | | || | ||||| | || Sbjct 161083 TGGAGAGTTGATTCCTTCTGAATGTTGTAATC--TGATAGTGTGCGTCCATCTTCCAGTT 161026 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 |||| || || | ||||| | |||||| || |||||||||||||| || ||||| Sbjct 161025 GTTTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTT 160966 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | ||||||| ||||||| || ||| | ||| || || | || || ||||| |||| Sbjct 160965 TTGCTTTTACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTG 160906 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || |||||||||||| Sbjct 160905 TAAGGGTCTTCACGAAAATTTGCATA 160880 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| || || || || || | | ||||||| |||||| Sbjct 161838 TGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 161779 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||| | |||||| || ||||| ||||| || || ||| ||| Sbjct 161778 TTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTG 161719 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| ||||| || | || || || | || || ||||| ||||| Sbjct 161718 GCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTA 161659 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || |||||||||||||||||||| Sbjct 161658 AGGGTTTTTACAAAAATTTGCAT 161636 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| || || || || || | | ||||||| |||||| Sbjct 162066 TGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 162007 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||| | |||||| || ||||| ||||| || || ||| ||| Sbjct 162006 TTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTG 161947 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| ||||| || | || || |||| || || ||||| ||||| Sbjct 161946 GCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTA 161887 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||||||| Sbjct 161886 AGGGTCTTGACGAAAATTTGCATA 161863 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| || || || || || | | ||||||| |||||| Sbjct 160855 TGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 160796 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||| | |||||| ||| |||||| ||||| || || ||| ||| Sbjct 160795 TTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTG 160736 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| ||||| || || || |||| || || ||||| ||||| Sbjct 160735 GCCTTGACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTA 160676 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||||||||| Sbjct 160675 AGGGTCTTGACGAAAATTTGCAT 160653 >seq129 Length=1828789 Score = 107 bits (118), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 ||||||| || || ||||| ||| | | | ||||| ||||| || ||||| | | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 | | ||| || || || |||||||||||| || || ||||| ||||||| ||| Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | |||||||| |||||| || | ||| ||||||||||| |||| |||||| |||| Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 15167 AAATTTGCATATTTG-AAATAAATTTTTTAATACTTATAAGAGAT 15210 | || ||||| || | || |||||||| || || || |||| Sbjct 1158605 ATATCTGCATCTTGGTGTATCTATTTTTTAGTA--TAAAAAAGAT 1158563 >seq2682 Length=416 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || || ||||| || || || || || | | ||||||| Sbjct 111 AACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTC 170 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| |||||| | |||| | |||||| ||| |||||| ||||| || || Sbjct 171 CAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTG 230 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| || ||| |||| ||||| || | || || |||| || || ||||| Sbjct 231 AATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTT 290 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || |||||||||||| Sbjct 291 TCCTGTAAGGGTCTTGACGAAAATTTGCATA 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357367786580315