Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq503 125 7e-24 seq739 122 8e-23 seq2682 89.7 5e-13 >seq503 Length=216272 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||||||||| || ||| || ||||||| || || | ||||| ||| Sbjct 162752 GTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCCTCCAATTGTTTACCA 162693 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||| ||| |||||||| || || || || || ||| || || |||| Sbjct 162692 GCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 162633 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| ||||| | | ||| ||||| | || | |||||| || || || ||| Sbjct 162632 ACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTT 162573 Query 127097 TTTACAAAAATCTGCAT 127113 ||||||||||| ||||| Sbjct 162572 TTTACAAAAATTTGCAT 162556 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||||||||| || || || |||||| || || | ||||| ||| Sbjct 161832 GTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 161773 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||| ||| ||||| || || || || || || ||| || || |||| Sbjct 161772 GCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 161713 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | | ||| ||||| | || | |||||| || || || ||| Sbjct 161712 ACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTT 161653 Query 127097 TTTACAAAAATCTGCAT 127113 ||||||||||| ||||| Sbjct 161652 TTTACAAAAATTTGCAT 161636 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||||||||| || || || |||||| || || | ||||| ||| Sbjct 160849 GTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 160790 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||| ||| |||||||| || || || || || ||| || || |||| Sbjct 160789 GCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 160730 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | ||| ||||| | || | |||||| || || || || Sbjct 160729 ACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTC 160670 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 160669 TTGACGAAAATTTGCAT 160653 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||||||||| || || || |||||| || || | ||||| ||| Sbjct 162060 GTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 162001 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||| ||| ||||| || || || || || || ||| || || ||| Sbjct 162000 GCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTA 161941 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | | ||| ||||| | || | |||||| || || || || Sbjct 161940 ACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTC 161881 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 161880 TTGACGAAAATTTGCAT 161864 >seq739 Length=1399493 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || ||| || ||||| | ||| |||||||| ||||| || ||||| Sbjct 7259 TCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGA 7200 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| ||||| ||||| ||||| ||||||| |||||||| || ||||| Sbjct 7199 AAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 7140 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGA 127064 || ||||| |||||| ||||| ||| | | || | ||||| | | || || | Sbjct 7139 AATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCT-TCAA 7081 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 7080 CTTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || ||| || ||||| | || |||||||| || || || ||||| Sbjct 8201 TCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGA 8142 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| ||||||||||| ||||| ||||||| |||||||| || ||||| Sbjct 8141 AAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 8082 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGA 127064 || ||||| |||||| ||||| ||| | | || | ||||| | | || || | Sbjct 8081 AATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCT-TCAA 8023 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 8022 CTTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || ||| || ||||| | ||| |||||||| ||||| || ||||| Sbjct 7031 TCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGA 6972 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| ||||||||||| ||||| ||||||| |||||||| || ||||| Sbjct 6971 AAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 6912 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| || || | | || | ||||| | | || || Sbjct 6911 AATACCTTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAAC 6852 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | ||||| || || | || || || || ||||||||| Sbjct 6851 TTCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATG 6803 >seq2682 Length=416 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||||||||| || || || |||||| || || | ||||| ||| Sbjct 124 GTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 183 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || ||| |||||||| || || || || || ||| || || |||| Sbjct 184 GCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 243 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | | ||| ||||| | || | |||||| || || || || Sbjct 244 ACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTC 303 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 304 TTGACGAAAATTTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475467758638160