Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_012635.1 Length=168394 Score E Sequences producing significant alignments: (Bits) Value seq2372 159 4e-34 seq2331 132 5e-26 seq3883 100 3e-16 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 159 bits (176), Expect = 4e-34 Identities = 311/455 (68%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 140715 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 140774 ||| || | ||| | ||| || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 140775 TTTGTTATTTTTCAAAAC-AAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAG 140833 |||||| | || || ||| ||||| ||||| |||||||| | |||||| | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAG-TTTTCTACTTCTAAATGCCATAACGGATAAAATA 73809 Query 140834 CAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAAT 140893 | || || || || || || | || || || || || ||||| ||||| || || || | Sbjct 73810 CCGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGT 73869 Query 140894 GTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTT 140953 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73870 ACTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTA 73929 Query 140954 CAGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAA 141013 ||||| ||| |||| | ||||| |||||||||||||||| || | |||| ||||| Sbjct 73930 AGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAA 73989 Query 141014 TTGAA---GCGGAAGCCTTA-TTGAT---AGACTTTAATGAATCACCTGCCTCAATAACA 141066 | | |||| || ||| |||| ||||| |||| | |||||| | Sbjct 73990 TAGCGCTCGCGGTGGCATTAATTGAGTCAAGACT-------ATCATCGCACTCAATCAAT 74042 Query 141067 ACGCATGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGTAAT 141126 || || ||||||||||| ||||||||||| || || |||||||| || || |||| Sbjct 74043 ACACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGG 74102 Query 141127 GAAATCTGTCGAGTAGATACCGCTTCATAAAAACG 141161 ||||| | || || | ||| ||||||||||| Sbjct 74103 GAAATTTTAAAGGTGGAAATCGCATCATAAAAACG 74137 >seq2331 Length=68774 Score = 132 bits (146), Expect = 5e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 63154 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 63213 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 63214 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 63273 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 63274 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAATTTTAACT 63333 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAATA 23820 Query 63334 GTAGGT 63339 || ||| Sbjct 23821 GTTGGT 23826 >seq3883 Length=158444 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 63153 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 63212 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 63213 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 63272 |||||||| || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 63273 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 63325 | | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 72414 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 72472 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 72473 CATTATACGATATCCGCA 72490 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538695364804560