Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq2372 152 5e-32 seq2331 127 2e-24 seq3883 100 3e-16 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 152 bits (168), Expect = 5e-32 Identities = 308/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 138377 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138436 ||| || | ||| | || || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 138437 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138496 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 138497 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 138556 || || || || || || | || || || ||||| ||||| ||||| || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 138557 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 138616 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 138617 GGCACGAATCATACCAACGTTAATACCAATTCCAGCACGTTTAGAGATATATTCAACAAT 138676 |||||| ||| |||| | ||||| ||||||||||| |||| || | |||| |||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 138677 TG---AAGCGGAAGCCTTATTGATAGACTTCAATGA--ATCACCTGCCTCAATAACAACA 138731 | |||| || ||| || || |||| || |||| | |||||| | ||| Sbjct 73991 AGCGCTCGCGGTGGC---ATTAATTGA-GTCAA-GACTATCATCGCACTCAATCAATACA 74045 Query 138732 CATGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAA 138791 || ||||||||||| ||||||||||| || || |||||||| || || || | ||| Sbjct 74046 CACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAA 74105 Query 138792 ATCTGTCGAGTAGATACTGCTTCATAAAAACG 138823 || | || || | || ||||||||||| Sbjct 74106 ATTTTAAAGGTGGAAATCGCATCATAAAAACG 74137 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/195 (72%), Gaps = 7/195 (4%) Strand=Plus/Plus Query 136295 AATAATATATTGGGTGCCTTTAAGGTGAAGCTGTTCATCGCGTGCAATGAACTTCATAAT 136354 ||| ||| |||| || || |||||||||| ||||||||| ||||| | || ||||| Sbjct 71593 AATCATAAATTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAAT 71652 Query 136355 CTTGGCATTACCTTCCATGATTTCCATGTTTTTATGGAAGTTAAAGGTACATGCGAAAGA 136414 |||||||| |||||||| | ||| | || ||| ||| | || || |||| Sbjct 71653 TTTGGCATTTCCTTCCATTAATTC---GCGTTCGGCAAAGGCAAACGAGCAGGC-AAAGC 71708 Query 136415 TA-CATAAAAACGAATAGCTTCCAATGCGTTGA-TTACATGCAAACAGAGGTAAAGAGAT 136472 || ||||||| ||||||||||| | || |||| ||| |||||||| ||||| | Sbjct 71709 TAACATAAAATCGAATAGCTTCAAGCGCATTGACGCTCAT-TAAACAGAGATAAAGTTTT 71767 Query 136473 TTCATTAGCTCACGC 136487 ||| ||| |||||| Sbjct 71768 TTCTTTAATTCACGC 71782 >seq2331 Length=68774 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 60974 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61033 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 61034 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61093 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 61094 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 61143 || | ||||||||||| | || || || || | |||||| |||||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 >seq3883 Length=158444 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60973 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 61032 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 61033 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 61092 |||||||| || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 61093 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 61145 | | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 68679 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GC 68737 |||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| || Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 68738 CATTATACGATATCCGCA 68755 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529208024101960