Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq2372 134 1e-26 seq3883 87.8 2e-12 seq1913 82.4 8e-11 >seq2372 Length=84335 Score = 134 bits (148), Expect = 1e-26 Identities = 319/470 (68%), Gaps = 14/470 (3%) Strand=Plus/Plus Query 139634 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 139693 || |||||||| | || | || ||||| || |||| ||| | |||||||| Sbjct 73647 GGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATT 73706 Query 139694 TGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 139753 ||||| || ||||| | ||| || | ||| || ||||| | || || || || | Sbjct 73707 TGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGC 73766 Query 139754 AC-AATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGCCGCCCCGCC 139812 || ||| || |||| | ||||||||||||| || ||| | | || |||||||| || Sbjct 73767 ACCAATAAGT-TTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCC 73825 Query 139813 ACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCAGAATGGGAT 139872 || | |||||||| || || || || || || || || || | || | ||||| || Sbjct 73826 GCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAAT 73885 Query 139873 AACGCCAGTATG--ACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATG 139930 | |||||||| ||| |||| ||| | |||| | |||| || || ||| | Sbjct 73886 ACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTA 73943 Query 139931 CCAGCGTTGATACCGATACCAGCACGCTTGCTAATA--TACTTGATGATTGCATTTGCTG 139988 || || || || || || ||||| || ||| | ||| || || | || || | || | Sbjct 73944 CCGGCATTAATGCCAATTCCAGCGCG-TTG-TGATACGTATTTAACAATAGCGCTCGCGG 74001 Query 139989 TTTCGTTGATGCCCTGCAATGA--GTCATCACTTTCGATCACCACACACGAACTAAATTG 140046 | | || || | ||| || ||||| | || |||| |||||||||||||| || Sbjct 74002 TGGCATTAATTGAGT-CAA-GACTATCATCGCACTCAATCAATACACACGAACTAAACTG 74059 Query 140047 GCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATTT 140096 ||| ||||| || ||||| || |||||||| || |||||||| || |||| Sbjct 74060 GCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTT 74109 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 136715 AATAATGTATTGTGTGCCTTTTAAGTGAAGTTGTTCATCACGCGCAATAAATTTCATGAT 136774 ||| || |||| || || | | |||||| |||||| || ||||| | ||| || || Sbjct 71593 AATCATAAATTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAAT 71652 Query 136775 CTTCGCGTTACCTTCCAGTAAACCACGTTCGGCAAAGCTGAAAGTACATGCAAAGGACAC 136834 || || || ||||||| ||| | |||||||||||| || | || |||||| || Sbjct 71653 TTTGGCATTTCCTTCCATTAATTCGCGTTCGGCAAAGGCAAACGAGCAGGCAAAGCTAAC 71712 Query 136835 ATAAAAACGAATTGCTTCCAGTGCGTTGACGCAGTGTGCACACAGATAAA 136884 |||||| ||||| ||||| || || ||||||| | ||| ||||||| Sbjct 71713 ATAAAATCGAATAGCTTCAAGCGCATTGACGCTCATTAAACAGAGATAAA 71762 >seq3883 Length=158444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 55860 TTACATTGCTTCCGTAAAGGTGCGCGAAATAACGTCACGTTGTTGGTCTGGAGTCAGACT 55919 |||||||| || ||||| || || | ||| ||||| |||||| ||| ||| | | Sbjct 116563 TTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGA 116504 Query 55920 ATTGAATCTTACGGCATATCCGCTAACGCGAATGGTTAGTTGCGGATACTTATCAGGATT 55979 || || | ||||||||| || ||| ||||| |||| ||| |||||||| |||||||| Sbjct 116503 GTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATT 116444 Query 55980 AGCAACCGCATCGAGAAGAAGATCGCGACTCATAACATTGATATTAGCGTGCTGACCACC 56039 | | ||||| | | || ||| | | || || | |||| |||||||||||| Sbjct 116443 TTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACC 116384 Query 56040 TTCGAC 56045 ||| || Sbjct 116383 TTCAAC 116378 >seq1913 Length=212763 Score = 82.4 bits (90), Expect = 8e-11 Identities = 162/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 37948 AATTGTGGTCCCGCCATATTGATGACTTGCCACCTGTGCGATAATTTGAGCGGTTACAGC 38007 ||| ||||| || ||||| ||| || || || || || ||||| || ||||||||||| Sbjct 32127 AATGGTGGTGCCACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGC 32068 Query 38008 ACATGCAACACCGATCGATTTAGGACTTTCGATTTGTGCGCTACCCAATTTAAAACCATT 38067 ||| || |||||||| ||| |||| || | |||| ||||||||| || Sbjct 32067 GGTGGCAGTTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTT 32008 Query 38068 CTCTAACATGTCTTTGAGATTAACAAGACAGCAGTTAGTAAACGGCATAGCTGGTGCATA 38127 || ||| | | | || || || ||||||| | || | | || ||||| Sbjct 32007 GGTTAGCATTCCATCTAAATCAATTAGCATGCAGTTAAACATAGGGAAAAAGGGAGCATA 31948 Query 38128 ATCCATATCATGATAATGAATATCACCGTCTACATGCGCTTTATAGATGTGCTCAGGTAA 38187 ||||| ||||||||||||||| ||||| ||||||| || | || | | |||||| Sbjct 31947 ATCCAGATCATGATAATGAATTTCACCACGATCATGCGCAATAGAAATTTCTTTAGGTAA 31888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532372604187920