Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1274 102 1e-16 >seq1274 Length=440581 Score = 102 bits (112), Expect = 1e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 160199 GTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTG 160258 ||| |||||| | | ||||||||||||| |||||||||||| ||||| | ||||| Sbjct 124460 GTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGGCGACTTGAAAACCA 124519 Query 160259 TAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGC 160317 |||||| | |||| | | ||| || || ||||| | || | || | ||||| | Sbjct 124520 TAGAAACAACGTGCCT-CGGTTACTTGTACTTCCTGACTAAATCGTTCGACAAGATTCTC 124578 Query 160318 ATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTC 160377 |||||| | || || | ||||||||||| || || || ||||| ||||||||| |||| Sbjct 124579 ATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATATGAAATGTTTCTC 124638 Query 160378 GTC 160380 || Sbjct 124639 ATC 124641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795099946653040