Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq739 127 5e-24 seq503 114 3e-20 seq129 104 6e-17 seq2682 98.7 2e-15 >seq739 Length=1399493 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||||| || ||||| || |||| ||| || || | | ||| Sbjct 8194 CGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTT 8135 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| ||||| || || || ||||| | |||||||||||| ||| ||| || Sbjct 8134 CTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 8075 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||||||| || ||| || || | ||||| | || ||| || ||||| Sbjct 8074 TCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAG 8015 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||| ||||| || || Sbjct 8014 GTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTG 7977 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||||| || ||||| || |||| ||| || || | | ||| Sbjct 7708 CGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTT 7649 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || || || || || ||||| | |||||||||||| ||| ||| || Sbjct 7648 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7589 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| |||||| || | ||||| | | |||||| ||||| Sbjct 7588 TCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAG 7529 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || ||||| ||||| || || Sbjct 7528 GTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTG 7491 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||||| || ||||| || |||| ||| || || | | ||| Sbjct 7936 CGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTT 7877 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || || || || || ||||| | |||||||||||| ||| ||| || Sbjct 7876 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7817 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| |||||| || | ||||| | | |||||| ||||| Sbjct 7816 TCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAG 7757 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || ||||| ||||| || || Sbjct 7756 GTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTG 7719 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||||| || ||||| || || | ||| || || | | ||| Sbjct 7480 CGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTT 7421 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || || || || || ||||| | |||||||||||| ||| ||| || Sbjct 7420 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7361 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| |||||| || | ||||| | | |||||| ||||| Sbjct 7360 TCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAG 7301 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || ||||| ||||| || || Sbjct 7300 GTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTG 7263 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||||| || ||||| || || | ||| || || | | ||| Sbjct 7252 CGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTT 7193 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || || || || || ||||| | |||||||||||| ||| ||| || Sbjct 7192 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7133 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||||||| || ||| || || | ||||| | || ||| || ||||| Sbjct 7132 TCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAG 7073 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| ||||| || || Sbjct 7072 GTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTG 7035 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||||| || ||||| || || | ||| || || | | ||| Sbjct 7024 CGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTT 6965 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| ||||| || || || ||||| | |||||||||||| ||| ||| ||| Sbjct 6964 CTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCT 6905 Query 199529 TCTCGCTCCTGAATCTT 199545 ||| || || ||||| Sbjct 6904 TCTTTGTCTTGGATCTT 6888 >seq503 Length=216272 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| |||||||| || ||||| | || ||||| | || || Sbjct 161856 CGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTG 161797 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||| || || || |||||||| | | ||| || || || ||| ||| Sbjct 161796 CGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCT 161737 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| ||| || ||| | ||||||| | || || |||| Sbjct 161736 TCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGA 161677 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || ||||| ||||||||||| Sbjct 161676 GTTATCGTTTTTCCTGTAAGGGTTTTTACAAAAATTTG 161639 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| |||||||| |||||||| | || ||||| | || || Sbjct 160873 CGAAGGCGAAGAACAAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTG 160814 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||| || || || |||||||| | | ||| || || || ||| ||| Sbjct 160813 CGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCT 160754 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| ||| || ||| | ||||||| || || || || | Sbjct 160753 TCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGA 160694 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || |||||||| Sbjct 160693 GTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTG 160656 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || ||||| ||||||||||| | || ||||| | || || Sbjct 162776 CGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGACAGCGTG 162717 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| || || || |||||||| | | ||| || || || ||| ||| Sbjct 162716 CGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCT 162657 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| ||| || ||||| ||||||| | || || || | Sbjct 162656 TCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGA 162597 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || ||||| ||||||||||| Sbjct 162596 GTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTG 162559 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||||||||| || ||||| || | |||||| || | | || Sbjct 161101 CGAAGACGAAGAACAAGGTGGAGAGTTGATTCCTTCTGAATGTTGTAATCTGATAGTGTG 161042 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| || || || || || || | | ||| || || || ||||||| Sbjct 161041 CGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCT 160982 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || ||||| |||||| || || ||| | ||||| | | ||| || || | Sbjct 160981 TCCTTATCTTGAAT-TTTTGCTTTTACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAG 160923 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || ||||| |||||||| Sbjct 160922 TGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTG 160884 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| |||||||| || ||||| | || ||||| | || || Sbjct 162084 CGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTG 162025 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||| || || || |||||||| | | ||| || || || ||| ||| Sbjct 162024 CGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCT 161965 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| ||| || ||| | ||||||| | || || || | Sbjct 161964 TCTTTATCCTGAATCTTGGCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGA 161905 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || |||||||| Sbjct 161904 GTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTG 161867 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| |||||||| ||||| || | ||||| || | | || | ||||||| Sbjct 162539 AGAACAAGGTGAAGAGTCGATTCCTTCTGAATATTGTAATCTGATAGTGTGCGTCCATCT 162480 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAA--------AATTCCTT 199529 ||||| || || || || || || | | ||| || ||||| | ||| |||| Sbjct 162479 TCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCCGGCGATCTGGCGGAATACCTT 162420 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 || ||||||||||| ||| || ||||| ||||||| | || || || | | Sbjct 162419 CTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAG 162360 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || || ||||| ||||||||||| Sbjct 162359 TTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTG 162323 >seq129 Length=1828789 Score = 104 bits (114), Expect = 6e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | || || || | || ||| | ||||||||||| |||||||| || || || Sbjct 1158783 TTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATA 1158724 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTC 199560 ||||| ||||| || || |||||||||| ||||| || ||| |||| || ||| Sbjct 1158723 AGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGAT-TTTAGCTTTTACATTTTC 1158665 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | || |||| || |||||| || | ||||| || ||||| || | |||||||||||| Sbjct 1158664 AATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAA 1158605 Query 199621 AATTTG 199626 || || Sbjct 1158604 TATCTG 1158599 >seq2682 Length=416 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || |||||||| |||||||| | || ||||| | || || | ||| ||| Sbjct 109 AGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCT 168 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || || |||||||| | | ||| || || || ||| |||||| ||| Sbjct 169 TCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATCC 228 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || ||| | ||||||| | || || || | || ||||| Sbjct 229 TGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTT 288 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || |||||||| Sbjct 289 TTTCCTGTAAGGGTCTTGACGAAAATTTG 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178837631677453