Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq739 93.3 5e-14 >seq739 Length=1399493 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| || | ||| | ||| ||| || ||||| || || || || ||||| | | || Sbjct 8186 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 8127 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||| ||||| || || ||||| ||||||||||| | || | | ||| ||||| Sbjct 8126 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 8067 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | || || ||| | || | | ||||| | ||| || |||| |||||||| Sbjct 8066 CTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGGT 8007 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || || ||||| |||||||| |||||| Sbjct 8006 TTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||| || | ||| | ||| ||| || ||||| || || || || ||||| | | || Sbjct 7928 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7869 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || || ||||| || || ||||| ||||||||||| | || | | ||| ||||| Sbjct 7868 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7809 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 |||||| ||| | || | | ||||| | ||| || |||| || ||||| Sbjct 7808 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7749 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || || || ||||| |||||||| |||||| Sbjct 7748 TTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| || || || || ||||| | | || || || || ||||| || || Sbjct 7679 CTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAA 7620 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | ||| ||||| |||||| ||| | | Sbjct 7619 GATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATT 7560 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || |||| || |||||||| || || || ||||| || Sbjct 7559 CTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGAC 7500 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 7499 AAAGATCTGCATT 7487 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || || || || || ||||| | | || || || || ||||| || || Sbjct 7451 CTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAA 7392 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | ||| ||||| |||||| ||| | | Sbjct 7391 GATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATT 7332 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || |||| || |||||||| || || || ||||| || Sbjct 7331 CTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGAC 7272 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 7271 AAAGATCTGCATT 7259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565199122996680