Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq739 96.9 2e-15 seq129 91.5 1e-13 seq503 82.4 5e-11 >seq739 Length=1399493 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||| ||||| | ||| ||||| || || |||||||| | | | | | |||| Sbjct 7244 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 7185 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | |||||| || |||| || ||||||||||| || | || | || |||||||| Sbjct 7184 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7125 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 ||||| |||| || ||| |||||| | ||| || ||||| ||||| || Sbjct 7124 CTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGGT 7065 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | |||||||| ||||||||||| Sbjct 7064 TTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||| ||||| | ||| ||||| || || |||||||| | | | | | |||| Sbjct 7016 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 6957 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | ||||| || |||| || ||||||||||| || | || | ||||||||||| Sbjct 6956 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTGTC 6897 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || ||| | || ||| |||||| | ||| || || | |||||| || Sbjct 6896 TTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 6837 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 ||| || ||||| || || |||||||||||||||| Sbjct 6836 TTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGT 6802 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||| ||||| | ||| ||||| || || |||||||| | | | | | |||| Sbjct 7472 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 7413 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | |||||| || |||| || ||||||||||| || | || | || |||||||| Sbjct 7412 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7353 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | || ||| |||||| | ||| || ||||| ||||| || Sbjct 7352 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7293 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || | ||||| || ||||||||||| Sbjct 7292 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||| ||||| | ||| ||||| || || |||||||| | | | | | |||| Sbjct 7700 CAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7641 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | |||||| || |||| || ||||||||||| || | || | || |||||||| Sbjct 7640 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7581 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | || ||| |||||| | ||| || ||||| ||||| || Sbjct 7580 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7521 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || | ||||| || ||||||||||| Sbjct 7520 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7488 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||| ||||| | ||| ||||| || || |||||||| | | | | | |||| Sbjct 7928 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7869 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | |||||| || |||| || ||||||||||| || | || | || |||||||| Sbjct 7868 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7809 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | || ||| |||||| | ||| || ||||| ||||| || Sbjct 7808 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7749 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || | ||||| || ||||||||||| Sbjct 7748 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7716 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || ||| ||||| | ||| ||||| || || |||||||| | | | | | |||| Sbjct 8186 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 8127 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | ||||| || |||| || ||||||||||| || | || | || |||||||| Sbjct 8126 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 8067 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 ||||| |||| || ||| |||||| | ||| || ||||| || || || Sbjct 8066 CTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGGT 8007 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | |||||||| ||||||||||| Sbjct 8006 TTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 >seq129 Length=1828789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| ||||||||||| | || | ||| |||| |||||||| || || |||||| Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | ||| |||||||| | || | |||||||| || ||||| ||| | | Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 | | || |||| ||| || || | || || |||||||| || |||||||| || | Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 39710 AGATCTGCAT 39719 | |||||||| Sbjct 1158605 ATATCTGCAT 1158596 >seq503 Length=216272 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| ||||| | ||||| || ||| ||||||||||| ||||| | Sbjct 160651 CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAA 160592 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||||||||| || |||| || || | ||| || || | || Sbjct 160591 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTGGAGGA 160532 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || || ||| ||| | || | | ||| || | ||| || Sbjct 160531 ATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAACT 160472 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || ||||| || || | || || ||||||||||||||| Sbjct 160471 TCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATG 160424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347346065601047