Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq2372 192 7e-44 seq2331 167 3e-36 seq1913 113 5e-20 seq3883 100 3e-16 >seq2372 Length=84335 Score = 192 bits (212), Expect = 7e-44 Identities = 341/495 (69%), Gaps = 12/495 (2%) Strand=Plus/Minus Query 41060 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 41119 ||||||| | || |||||| ||| | || ||||| || |||||||||||||| || Sbjct 74135 TTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATTATGGCGGGGGT 74076 Query 41120 ACGTACTCCTACGCGCCAGTTCTCCAGTT---GTGTAGTAATTGAATCGGGTGATTCTCT 41176 || ||||| || |||||||| |||| ||||| | ||||| | | |||| ||| Sbjct 74075 GCGCACTCCAACTCGCCAGTTT---AGTTCGTGTGTATTGATTGAGTGCGATGATAGTCT 74019 Query 41177 TGGTTCTCTTAACGCTGTAACCTCT---GCGATCGTGAAGTATATTTCACAACGTGCTGG 41233 || || |||| || ||| | || || || || || | |||||||| ||||| Sbjct 74018 TGACTCAATTAATGCC---ACCGCGAGCGCTATTGTTAAATACGTATCACAACGCGCTGG 73962 Query 41234 TATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGC 41293 ||||| |||| || || | || || || | || | ||||| ||||| ||||| Sbjct 73961 AATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGGCGAAGC 73902 Query 41294 TGTTCATACTGGTGTGATTCCTTTCTGGAAACATATCCAAACCGCTGTTAAATCCTGTTC 41353 | ||||||||| ||||| || | || | ||||||| ||||| ||||||||||| Sbjct 73901 GTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAATCCTGTTC 73842 Query 41354 ACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGT 41413 || || || || || || || || ||||| | | |||||| || |||||| | ||||| Sbjct 73841 TCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCATTTAGAAGT 73782 Query 41414 TGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCT 41473 |||||| | ||||| | || ||| || | |||||||| ||||| || ||| | Sbjct 73781 AGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTGCGCCATTT 73722 Query 41474 TGATTACGGTGTACAGCTTAACCAGTTGATGTATAAACGCTTAATGAATCGTGATTACAT 41533 ||||| || ||||| |||| | || ||||| | || ||||| || || | || Sbjct 73721 AGATTATGGGGTACAAATTAATAAATTAATGTACCAGCGTTTAATTAAAAACGAAAATAT 73662 Query 41534 TACGCTGTTTAGTCC 41548 |||||||||| || Sbjct 73661 CTCGCTGTTTAGCCC 73647 Score = 91.5 bits (100), Expect = 2e-13 Identities = 196/288 (68%), Gaps = 14/288 (5%) Strand=Plus/Minus Query 42843 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAACTT 42902 || ||||| ||||| ||| ||| | | | || |||| ||| |||||||||| Sbjct 72267 GTAGCACGCTATGATCAGCAAAAATATGAGATGTTTGAAAAATTGATTGAAAAACAACTC 72208 Query 42903 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42962 || || || |||||||| ||||| || ||| | ||| || ||||| | ||| | Sbjct 72207 TCCTTTTTTTGGCGTCCAGAAGAGGTGGATATTACTAAAGATCGTATTGATTATCAGCAG 72148 Query 42963 CTTCCTGAACATGAAAAA---ATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTA 43019 || ||||||||||||||| ||| || || ||| || | ||||||||| | ||| Sbjct 72147 CTACCTGAACATGAAAAACATATCTTTATC---AGTAATTTAAAATATCAAACCTTATTA 72091 Query 43020 GATACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCC---AATTGC-ATCCGATGT 43075 || ||||||| |||||| | || || | ||||| || || |||| | |||| | Sbjct 72090 GACTCCATTCAAGGACGTAGTCCAAATGTGGCATTATTACCTCTAATTTCTATCC---CT 72034 Query 43076 GAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCA 43123 || | ||||| ||| | ||||| ||| | ||| ||| || || || Sbjct 72033 GA-ATTAGAAACATGGGTAGAAACTTGGTCATTTTCTGAGACTATTCA 71987 >seq2331 Length=68774 Score = 167 bits (184), Expect = 3e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 51205 ACCAACTGTTAAGGTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAAC 51264 ||||||| |||| || ||||||||||| || ||||| || || || || || || ||||| Sbjct 23826 ACCAACTATTAAAGTAGAAGGTGGACAACACTTAAATGTGAATGTATTACGTCGTGAAAC 23767 Query 51265 TCTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGG 51324 | || |||||| |||| |||||||| ||||| || ||||| || ||||||||||| Sbjct 23766 GTTAGAAGACGCGGTTAAACACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGG 23707 Query 51325 TTATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAAC 51384 |||||| ||||||||||| ||| | || || ||||| ||||| |||||||| || || || Sbjct 23706 TTATGCGGTGCGTTTTAATTCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTAC 23647 Query 51385 CTTTACA 51391 |||||| Sbjct 23646 TTTTACA 23640 >seq1913 Length=212763 Score = 113 bits (124), Expect = 5e-20 Identities = 252/373 (68%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 152919 GCCCGTGCATATATCGAATATCGTCATGATCGTGATATCGCCCGTGAACAAAACGGAAAA 152978 || ||||| ||||| || |||||||||||||||||| |||||||||| | Sbjct 31684 GCGCGTGCCTATATTGAGTATCGTCATGATCGTGATCGTATTCGTGAACAAAGTAGCCGT 31743 Query 152979 TTATTCCGTGATATCAAGGGTTTGATGACTCTTAGTAACAAAGAATTAACCAACGAAAAC 153038 ||| | || || || || || || | ||||| | | | | |||||||| Sbjct 31744 TTAAATCAGGAGATTAAAGGGTTAATTGAACAAAGTAATATGGCAATTTTGAACGAAAAT 31803 Query 153039 GCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCTGGTATCGTTTCT 153098 || || |||||| | || | || ||| | |||||| | | || ||||||||| || Sbjct 31804 GCTAATAAAGATAGTAAAGTTATTCCTACTCAGCGCGATTTATTAGCAGGTATCGTTGCT 31863 Query 153099 AAACAT-ATGGCGCGTAACCATATTCTACCGAAACATATTGTTGCGGCGCATGATTCCGG 153157 |||||| ||| | || |||| |||| ||| | ||| | ||||||||| || Sbjct 31864 AAACATTATGCTAAGCAAT-ATATCTTACCTAAAGAAATTTCTATTGCGCATGATCGTGG 31922 Query 153158 TGATATTCATTATCACGATCTGGATTA-CAGCCCTTTCACCCCATACACTAACTGCTGTC 153216 ||| ||||||||||| ||||||||||| |||||| ||| || ||||||| | Sbjct 31923 TGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTAT-GTTTAACTGCATGC 31981 Query 153217 TTGTTGACCTGAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCGAAC 153276 | |||| | | || ||| || || || || ||||| || ||||| || |||| Sbjct 31982 TAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTGAAATTGAAC 32041 Query 153277 CGCCTAAATCAAT 153289 ||||||||||||| Sbjct 32042 CGCCTAAATCAAT 32054 >seq3883 Length=158444 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 || |||||||| ||||| | || || ||||| || || ||||| | | ||||| Sbjct 116378 GTTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCA 116437 Query 51278 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 51337 | ||| |||||||||| || ||||| ||||| || ||||||||||||||||| || ||| Sbjct 116438 ATGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGT 116497 Query 51338 TTTAACTC 51345 |||||||| Sbjct 116498 TTTAACTC 116505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558028421305440