Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014260.1 Length=172253 Score E Sequences producing significant alignments: (Bits) Value seq2372 120 3e-22 >seq2372 Length=84335 Score = 120 bits (132), Expect = 3e-22 Identities = 285/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 144930 CCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATTTTTCAGAACGAGC 144989 || || || | ||| || | || ||||| |||| || |||||| || || | Sbjct 73713 CCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGCACCAAT 73772 Query 144990 AGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATT 145049 | ||||| ||||| |||||||| | |||||| | | || || || || || || | Sbjct 73773 AAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACC 73832 Query 145050 CCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCG 145109 || ||||| ||||| ||||| ||||| || ||||| | || | ||||||||| ||| Sbjct 73833 CCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATACAACCA 73892 Query 145110 GTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTG 145169 ||||| |||| || || || || ||| ||||| ||| |||| | || Sbjct 73893 GTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACCGGCATTA 73952 Query 145170 ATACCAATACCTGCACGTTTAGAAATGTATTCAATTATCGAGTTAGCAGTTTTGTTAATA 145229 || ||||| || || |||| || | ||||| || || | | | || || ||||| Sbjct 73953 ATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAGCGCTCGCGGTGGCATTAATT 74012 Query 145230 GATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGGCGAGTCGGTGTA 145289 || | || || | ||||| | ||||| |||||||| |||||||| || || Sbjct 74013 GAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGGAGTG 74072 Query 145290 CGCGCTCCAGCCATAATAGGGGTAGGCAACGAAACCTGACGAGTACTTACAGCATCATAA 145349 ||| | || |||||||| || ||||| | |||| | | || | ||||||||| Sbjct 74073 CGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGCATCATAA 74132 Query 145350 AAACGAATAAT 145360 ||||| |||| Sbjct 74133 AAACGTTTAAT 74143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551043306717320