Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq2372 179 4e-40 seq2331 168 8e-37 >seq2372 Length=84335 Score = 179 bits (198), Expect = 4e-40 Identities = 322/469 (69%), Gaps = 6/469 (1%) Strand=Plus/Minus Query 41133 TAAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTC 41192 |||| | || |||||||||| ||||||||||| ||||| ||||| || || ||||| Sbjct 74111 TAAAATTTCCCTACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTT-- 74054 Query 41193 CAGTT---GTGTTGTAATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTC 41249 |||| |||| | || || | | |||| ||| | || | || || || Sbjct 74053 -AGTTCGTGTGTATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAG 73995 Query 41250 CGCGATCGTGAAATATATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCG 41309 ||| || || ||||| | || ||||| || || || || | || ||||| | || || Sbjct 73994 CGCTATTGTTAAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCG 73935 Query 41310 CGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTG 41369 || | || ||||| ||||| ||||| ||||||| || ||| || || | Sbjct 73934 TGCCTTAGGAAGTCCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTA 73875 Query 41370 GAAACACATTCAGACGGCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGC 41429 || || | || || || || ||||| ||||| || || || || || || || || || Sbjct 73874 TAAGTACTTCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGC 73815 Query 41430 AACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAA 41489 ||| | | ||||||| | |||||| | ||||| |||||| | |||| || ||||| Sbjct 73814 AACGGTATTTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAA 73755 Query 41490 CCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAACGATTT 41549 |||||| |||||||||| || | || || | || ||||| ||||| |||| | || Sbjct 73754 CCGTGGTATTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATT 73695 Query 41550 GATGTATAAGCGTTTAATCAATAACGATTACATCACTCTGTTCAGCCCT 41598 ||||| |||||||||| || ||||| | ||| | ||||| |||||| Sbjct 73694 AATGTACCAGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCT 73646 >seq2331 Length=68774 Score = 168 bits (186), Expect = 8e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 51260 TCGCAAAACGTGAAGTCGATATTGAATTTCAACCCACTGTTAAAGTGGAAGGTGGACAAC 51319 ||| | | |||||||| |||||| | ||| ||| ||||||| ||||||||||||| Sbjct 23857 TCGAATATCGTGAAGTACCTATTGATGTCGCACCAACTATTAAAGTAGAAGGTGGACAAC 23798 Query 51320 ACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCTGTGAAGCATCCAGAAA 51379 ||||||| || || || || || || ||||| | ||||| || || || || || |||| Sbjct 23797 ACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAACACCCTGAAA 23738 Query 51380 AATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGTTTCAATTCACTGACTC 51439 | ||||| || ||||| || ||||| || || ||||| |||||||| |||||| | || | Sbjct 23737 ACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAATTCATTAACGC 23678 Query 51440 CTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACA 51477 | |||||||| || |||||||| || || || |||||| Sbjct 23677 CAGAACAACAACGTGACGTTATTGCTCGTACTTTTACA 23640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565554298314720