Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq1913 304 2e-77 seq2372 122 1e-22 seq3883 87.8 3e-12 seq1614 86.0 9e-12 >seq1913 Length=212763 Score = 304 bits (336), Expect = 2e-77 Identities = 1167/1798 (65%), Gaps = 51/1798 (3%) Strand=Plus/Minus Query 123222 TGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAGATCCAGGG 123281 ||||| |||||||| | ||||| |||||||| || | ||||||| | || | ||| Sbjct 33566 TGTTTAACACGACGTTTTACTTCTTCCTGTTTACCCGCATTAAATGGTCTAGCATCGGGG 33507 Query 123282 TTACCCAAATACCCACAGACGCGACGAATAACGTTCATCTTACGGTCATCGTGATTGCCA 123341 | |||||||| ||||| || |||||| |||| || |||| | ||||||||| ||| Sbjct 33506 CTCCCCAAATAGCCACATACACGACGAGTAACCGACACTTTACTGGAATCGTGATTACCA 33447 Query 123342 CACTTCGGACATTCGTATCCTTTAGAAGTAGCGGTAAACTCACCGTTAAATCCACATTCA 123401 || | ||||| | | |||||| |||| | ||| ||||| || | ||||||||| Sbjct 33446 CAACTTGGACAAGTGAACCCTTTACTAGTACAAGAAAATTCACCACTATAACCACATTCA 33387 Query 123402 AAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGGAGTGTTCCGATAAGCATAATCC 123461 |||| |||||| || || || || ||||| || ||| | | ||| ||||||| Sbjct 33386 TAACACTCATCAATAGGGGTATTCGTCCCATAATAAGGAACGCGGCTATAGCTATAATCC 33327 Query 123462 CAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCGTATGAAATG 123521 || || |||| | |||| ||||| || | |||||| || |||||||| || | ||| Sbjct 33326 CATACATCTTCTAACGCTTTAAGATTATGCTGCATATTAGGGTATTCACCATAACAGATG 33267 Query 123522 AAACCACCGGTACTAAGCGGAATGAATTGCTTTT-CAAAATCGATCTTGTCATACGGATT 123580 || ||||| | | | | || |||||| |||| || | || | ||| || | Sbjct 33266 AAGCCACCATTTGCGATCATAG-GATAGGCTTTTTCAAACTCTAATTTTTGATAAGGGTC 33208 Query 123581 TGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATCAAACAC-CT 123639 || | |||||| ||||||||| || || || || || |||||||| ||| | Sbjct 33207 AACTTTTTTCTCCACATCCAGATGGAAACTATTCGTATAGTAACCTTTATCATTCACACC 33148 Query 123640 TGTGCTCATACAGAG--CGTGATCGATCTTAGCG----AAACGATAACACAGACTTTCAG 123693 || | || | | | || | |||| | || ||||||| ||| ||| ||||| Sbjct 33147 TGAAATAATCCCAAATTCCTGCAC-ATCTAAACGGCAAAAACGATCACATAGATTTTCAC 33089 Query 123694 ATGGAGTGCCATACAGACTAAACGCCAGTCCAGTTTCTGCTTTCCACGCAT-TAGC-CAT 123751 ||| || | ||| | |||||| | || ||||| |||||||| | || | ||| Sbjct 33088 TTGGCGTACTATATAAACTAAATCCGTAACCTGTTTCCGCTTTCCATTGTTCTACCGCAT 33029 Query 123752 TTCTTTCATGCGAGACAATACGTCCAGCAAGAATGCTTGTTTCTCGGCGTTTTCCA-TAA 123810 | | | |||||| || || || | |||| || | | || || Sbjct 33028 CACGTAATCGTTGTACAATA------GCTAG---GCCTTTTTCCCGCAATGTCTCACTAT 32978 Query 123811 CGTGCG-ATTCATCGTTGAACT-TGATGATCT--CAGATACTTCATGCAATCCAATATAG 123866 || | || ||| | || | | || || || || ||||||| | |||||||| Sbjct 32977 CGAAAGGATGAATCTTATCGCTATAAAGAGCTTGCA-ATGCTTCATGGATACCAATATAA 32919 Query 123867 CC-AATGCTAACAGATGCGCGACCAT-TTTCAAATGCTTT--CATGATGTCATCATTTGG 123922 || |||| || ||| || ||||||| ||| ||| | | || | ||||| || | Sbjct 32918 CCTAATGA-AATAGAGGCTCGACCATCTTTGAAAATTTGTGCCACACTATCATC--TTCG 32862 Query 123923 TTTCAGACGAACACCACAAGCACCTTCAACATAAAGAATCGGAGCAACGCTTGCCTTGAC 123982 ||| | ||||| ||||| || ||||| | ||| | || || ||||| | ||| || || Sbjct 32861 TTTAAT-CGAACGCCACATGCGCCTTCCATATATAAGATAGGTGCAACTCGTGCTTTAAC 32803 Query 123983 ACCACGCAGACGATCAACGCGAGTCAACAAAGCTTTCTTAACGATTTCCATACGCTCTTC 124042 | ||||| ||| || |||| || ||||| | | ||| ||| | || Sbjct 32802 ATTTTCTAGACGCGCAATACGTGTCATTAATGCTTTACGCGCTAAGACCAAACGTTGATC 32743 Query 124043 CAGAATTTCAAAGAAGCGCATTTGATTGCCGTTTGCGTCGAGTGCGATACGCGGCAAGTT 124102 || |||| |||| || | || || ||||| || | || ||||| || | || Sbjct 32742 CAATATTTTCCAGAATCGTGACTCATCACCTTTTGCTTCAATGGCAATACGAGGAATATT 32683 Query 124103 CAGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACTTCATTACCGGTTTCGTCTTC 124162 | | ||| || || | ||| || | || ||||||| || | || || ||||| Sbjct 32682 TAAACTAATTACCCCTAAATTATTACGCCCATCATGAATTTGCTGCCCA---TCTTCTTC 32626 Query 124163 CCAGCGATGCAAGAAACTACGGCATCCCATAGGGAACTTAAAGCTACCAGTCACTTCTAC 124222 | | ||||||||||| || ||||| ||| ||||| || || || | || Sbjct 32625 ATAAACACCTAAGAAACTACGACAGCCCATTGGGGTTTTAAATGATCCTGTTACCTTGAC 32566 Query 124223 CACTTTATCATAACTCAAGATGTCTGGATACATACGCTTGGCAGCGCACTCCAGTGCCAT 124282 ||||| ||||||| | | ||| || |||||||| || || || || ||||| | ||| | Sbjct 32565 CACTTGATCATAATTAAGGATATCAGGATACATTCGTTTAGCGGCACACTCTAATGCTAA 32506 Query 124283 CTGTTTGATACGATACAGAGGATCAGTTGGTTTCAAGTTGTGTCCGTCTTTCAGCGCGAA 124342 ||||| || ||| |||| ||||| || || || ||||| | ||| || Sbjct 32505 TTGTTTAATCGTATAATTTTGATCTGTTGGCTTATGATTAACCCCATCTTTGATCGCAAA 32446 Query 124343 AACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTGCCAAGACCTTTCATCCGAACTTT 124402 || | ||| || ||||| | || || | ||| || | ||| || || || Sbjct 32445 GACTAATTTAGGAAAAACTGCCGTTTTATGATTTTTTCCTAAACCAACAATACGCACACG 32386 Query 124403 CAGAATTGCTTCCTGAATGAGTTCGGATTCCCAGCTAGTGCCTAGTCCAAACCCGAAAGT 124462 | || | ||| ||||| | |||||||| || ||||||| ||||| || || || Sbjct 32385 TAAGATCGATTCTTGAATTAAGCGTGATTCCCAACTGGTGCCTAAACCAAATCCAAATGT 32326 Query 124463 GCAGAATGGAGTTTGACCATTTGCCGAGTGCAGAGTGTTTACCTCATACTCTAGGCTTTG 124522 || || || || ||||| || | || || || || || ||||| |||| ||| Sbjct 32325 AACAAAAGGGGTCTGTCCATTCGCAGTATGTAGCGTATTGACTTCATATTCTAACGATTG 32266 Query 124523 CATTGCATCATA-CACGGCTTTGCGAGTCTTTTCAATAGCGTA-TTGCCTTTGATCTGGA 124580 | ||||||||| ||| ||| | ||| | ||||||| || | | ||| ||| Sbjct 32265 AAATGCATCATAACACTCTTTTTC-AGTACGTGACTTAGCGTAGTTTTCGAT-ATCAGGA 32208 Query 124581 ATTTTCCAATAACGCGCTTCATCCAA--ATGCTTTTCATGTGTCATCTTAACATAAGGTG 124638 |||| ||| | ||| || | | ||| ||||||| | || ||| | | Sbjct 32207 ATTTGCCACTCTTCGGCT--ATACGACGATGTTTTTCATAACTTTTCGATACAAATTTAG 32150 Query 124639 CCAATGCTTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTGCAACCTGTG 124698 ||| |||| ||||| |||||||| ||| ||||||||||||| || || || || || | Sbjct 32149 CCAGAACTTCATCAATACGATTAATGGTGGTGCCACCATAAATATGGCTGGCTACTTGGG 32090 Query 124699 CAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTTCGATCTGTG 124758 | || || || || || ||||| | || || | || ||||| | ||| || | | Sbjct 32089 CTATAATCTGTGCGGTTACAGCGGTGGCAGTTGAAATTGATTTAGGCGGTTCAATTTCAG 32030 Query 124759 CATTACCCA-TGCGGAACCCACGCTCTAACATGCCGTTGAGATCAATCAACATGCAGTTA 124817 |||| |||| | ||||| | | || ||| || | | |||||| | |||||||||| Sbjct 32029 CATTTCCCATTTTAAAACCCTTGGT-TAGCATTCCATCTAAATCAATTAGCATGCAGTTA 31971 Query 124818 AACATTGGGAAGAACGGAGAGTAATCAAGATCATGGAAGTGAATAAAACCAGCTTCGTGT 124877 ||||| ||||| || |||| ||||| |||||||| | ||||| |||| || || Sbjct 31970 AACATAGGGAAAAAGGGAGCATAATCCAGATCATGATAATGAATTTCACCACGATCATGC 31911 Query 124878 GCTTGCAGAACTTCGGTCGG---CAGATAGTGCTTTGCAAAGTGCTTGCTTACTATGCCC 124934 || || ||| | || | ||| ||||| ||| | || || || || || Sbjct 31910 GCAATAGAAATTTCTTTAGGTAAGATATATTGCTTAGCATAATGTTTAGCAACGATACCT 31851 Query 124935 GCGACTAAATCGCGTTGTGTCGGAATAACTTTTGCATCTTTGTTTGCATTCTCATTCA 124992 || | ||||||||| || || ||||||||||| |||||| || ||||| || |||| Sbjct 31850 GCTAATAAATCGCGCTGAGTAGGAATAACTTTACTATCTTTATTAGCATTTTCGTTCA 31793 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| | ||||| ||| ||||||| |||||| ||||||||||||||| ||||||||| Sbjct 103454 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 103395 Query 191922 ACTAAGCTAACG 191933 ||| |||||||| Sbjct 103394 ACTGAGCTAACG 103383 >seq2372 Length=84335 Score = 122 bits (134), Expect = 1e-22 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 126995 TTTAGCAATATCAACCATTTCTGGGTCATCTTCGCCGTTTTGCCAAGTGCGAATTTGATA 127054 |||||| |||||| |||||||||| |||||||| || | | | || ||| | | Sbjct 71542 TTTAGCGATATCAGCCATTTCTGGATCATCTTCACCACTGCGTAACGTATTAATCATAAA 71601 Query 127055 CTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGCGTT 127114 || || || | ||||| | |||||| || ||||||||||| || || || || || Sbjct 71602 TTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAATTTTGGCATT 71661 Query 127115 GCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACG 127174 |||||||| || ||||||||||||| | || | |||||| ||||| |||||||| || Sbjct 71662 TCCTTCCATTAATTCGCGTTCGGCAAAGGCAAACGAGCAGGCAAAGCTAACATAAAATCG 71721 Query 127175 AATCGCTTCCAAAGCG 127190 ||| ||||| ||||| Sbjct 71722 AATAGCTTC--AAGCG 71735 >seq3883 Length=158444 Score = 87.8 bits (96), Expect = 3e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 189963 TGGTGCGGATGGTCGGACTCGAACCGACACGCCTAT-GGCGCTAGAACCTAAATCTAGTG 190021 |||||||| ||| |||| |||| |||||||| ||||| ||||||||||||| ||| Sbjct 133495 TGGTGCGGGTGGAGAGACTTGAACTCACACGCCTCGCGGCGCCAGAACCTAAATCTGGTG 133436 Query 190022 CGTCTGCCAATTTCGCCACATCCGCGTT 190049 ||||| |||||||||||||| |||| || Sbjct 133435 CGTCTACCAATTTCGCCACACCCGCATT 133408 >seq1614 Length=125919 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| | ||||| ||| ||||||| |||||| ||||||||||||||| ||||||||| Sbjct 38240 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 38181 Query 191922 ACTAAGCTAACG 191933 ||| |||||||| Sbjct 38180 ACTGAGCTAACG 38169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720679518301920