Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq2372 138 1e-27 >seq2372 Length=84335 Score = 138 bits (152), Expect = 1e-27 Identities = 318/474 (67%), Gaps = 14/474 (3%) Strand=Plus/Plus Query 141423 TCGTTATTGATATAACGCTCAATAAGTAACTCATTGATTTGAAGGCCATAATCCATGTGA 141482 ||||| || || |||||| | ||| | ||| ||||| | |||||||| | || Sbjct 73668 TCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATTTGTACCCCATAATCTAAATGG 73727 Query 141483 CGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAACACAATCAAGTTTTCCACTTCA 141542 || | || |||||||||| ||| ||| || | ||| | |||||||| ||||| Sbjct 73728 CGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCT 73787 Query 141543 AGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTTACGAATACCACCTTGAGAACAG 141602 | ||||| | || | || | ||||||| || || | || |||||||||||| Sbjct 73788 AAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAG 73847 Query 141603 CAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTACTACG-CCAGTGTGTTTGACTTC 141661 | | || |||| | |||| ||| | || || | ||| ||||| || |||| Sbjct 73848 GATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAA-TACAACCAGTATGGAACGCTTC 73906 Query 141662 GCCTGGGCCAATTTTCGAACCTTCA---GCTCGAATCATGCCTGCGTTAATCCCGATACC 141718 ||| || || || || | | || || ||| | || || ||||| || || || Sbjct 73907 GCCACCGCGGAT---CGGACTTCCTAAGGCACGGATCTTACCGGCATTAATGCCAATTCC 73963 Query 141719 TGCTCGCTTAGAAACATACTTAACAATAGCA---GAGTTTGCATCATTGATTGAGTCAAG 141775 || || | || || || ||||||||||| | | | |||| | ||||||||||| Sbjct 73964 AGCGCGTTGTGATACGTATTTAACAATAGCGCTCGCGGTGGCATTA---ATTGAGTCAAG 74020 Query 141776 GCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAGTTGGGGTACGAACACC 141835 || ||| | | ||||| | |||||| ||||| || || |||||||| || || || || Sbjct 74021 ACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCC 74080 Query 141836 AGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTTGAAACAGCTTCATAAAA 141889 ||||||||||| ||||| | || |||||| || |||| || |||||||| Sbjct 74081 CGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGCATCATAAAA 74134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524933121174920