Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq2331 154 2e-32 seq2372 147 2e-30 seq3883 100 3e-16 >seq2331 Length=68774 Score = 154 bits (170), Expect = 2e-32 Identities = 141/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62002 GTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAGAATTAAATCGGACA 62061 || |||||||| |||||||||||||| || ||||||| ||| | |||||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 62062 GCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 62121 ||||||||||||||||||||||| | || || || ||||| || |||| ||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 62122 TCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCACCTTCAACTTTAA 62179 ||||| ||||| | | |||||||| || | ||||| |||||||| ||||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq2372 Length=84335 Score = 147 bits (162), Expect = 2e-30 Identities = 331/496 (67%), Gaps = 6/496 (1%) Strand=Plus/Plus Query 137853 AACAGAGTGATGTAGTCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGATTTGAACA 137912 ||||| | ||| | |||| |||||| | ||| | |||| | | || ||||| || Sbjct 73653 AACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATTTGTACC 73712 Query 137913 CCATAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAGG 137972 |||||||| || || || | || ||||| || | || ||| || || || | Sbjct 73713 CCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGCACCAAT 73772 Query 137973 AGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACCACGGACT 138032 | ||| || ||||| | ||||| | ||||| | | || ||||| || || || || Sbjct 73773 AAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACC 73832 Query 138033 CCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAATAACTCCA 138092 |||||||| ||||| || || || |||||||||| || || | || |||||| ||| Sbjct 73833 CCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATACAACCA 73892 Query 138093 GTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCT---GCACGAATCATACCTGCG 138149 ||||| |||| || || ||| | || | || ||||| ||| |||| || Sbjct 73893 GTATGGAACGCTTCGCCACCGCGGATC---GGACTTCCTAAGGCACGGATCTTACCGGCA 73949 Query 138150 TTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCTGATTTGTTA 138209 |||||||| || ||||| |||| || | ||| | ||||| | || | ||| Sbjct 73950 TTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAGCGCTCGCGGTGGCATTA 74009 Query 138210 ATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGTAGGA 138269 ||||| | || |||| | ||||| | || || ||||| || || ||||| ||| Sbjct 74010 ATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGGA 74069 Query 138270 GTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTTTCTTAGTTGACACAGCATCA 138329 || || | || ||||| ||||| || || || |||||||| || || | |||||| Sbjct 74070 GTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGCATCA 74129 Query 138330 TAAAAACGAATAGTGT 138345 |||||||| || ||| Sbjct 74130 TAAAAACGTTTAATGT 74145 >seq3883 Length=158444 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 61988 ATTACATTTCCTTGGTGAAAGTACGTGCAATAACGTCACGCTGCTGTTCTGACGTCAGAG 62047 |||||||| | || || || || | ||| ||||| || || ||| || | || Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 62048 AATTAAATCGGACAGCATAACCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGAT 62107 | ||||| || || ||||||||||||||||||||||| | || ||||| ||||| |||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 62108 GTTGAACTGCATCTTCTAAAGTTTCTTTAGTCAGAACATTCACGTTCAGATGTTGGCCAC 62167 || | ||||||| ||| ||||| | | | || || || || || || || |||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 62168 CTTCAACT 62175 |||||||| Sbjct 116384 CTTCAACT 116377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529563199420000