Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq80 408 5e-109 seq3761 163 4e-35 seq2331 127 3e-24 seq478 120 4e-22 seq136 111 2e-19 seq19 89.7 7e-13 >seq80 Length=1366910 Score = 408 bits (452), Expect = 5e-109 Identities = 929/1378 (67%), Gaps = 26/1378 (2%) Strand=Plus/Minus Query 6496 TTCGACCGTTCCTTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTT 6555 ||| || || | ||||| | | | ||||| || ||||||||||| || ||| | Sbjct 1323412 TTCCACTGTGCTCTTCATGTTAAAGCAGTAAGACTCAAGACCATTCTTAGCAGCGATAGT 1323353 Query 6556 TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAAT 6615 || | || ||||||||| ||| ||||| || || | |||||| ||||||| Sbjct 1323352 TTCTTTCTGTTTCTCATCTTCACTACGATATTTTTCAGCTTCGTTGACCATTCTTTCAAT 1323293 Query 6616 GTCTTCTTTCGATAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCG 6674 ||||||||| | ||| | || || ||||| ||||| ||||| || | ||| || | Sbjct 1323292 GTCTTCTTT-GCTAAGACGACCTTTGTCATTGGTAATGGTAATTTTGTTCTCTTTCCCAG 1323234 Query 6675 AGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACAT 6734 | ||||| | ||| ||||||| ||||||||| ||||||| || || | || | Sbjct 1323233 TAGATTTATCCACTGCAGAGACATTCAGAATACCATTGGCATCAATGTCAAATGTAACTT 1323174 Query 6735 TAATTTGTGGTGTACCCCTCG--GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAG 6792 ||| || || || ||||| | || | ||||||||| | | |||||| |||| | Sbjct 1323173 CAATCTGAGGA--ACTCCTCGAGGGGCTGGTGGAATACCACTGAGCTCAAATTTACCTAA 1323116 Query 6793 TAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGG 6852 ||| |||||||| ||| | | ||||||||||||||| |||| ||| || | || Sbjct 1323115 TAAGTTGTTATCCTTCGTCATAGCACGTTCACCTTCATAAACTTGAATCAATACTCCTGG 1323056 Query 6853 TTGATTATCTTGTGCCGTTGAGAAGATTTG-TTCTTTCTTAGATGGAATCGTCGTATTTC 6911 ||||||||| || | |||| |||| ||| | || | |||||| || ||||||| Sbjct 1323055 TTGATTATCAGCATATGTAGTGAAGGTTTGAGTCTGT-TTTGTTGGAATAGTAGTATTTC 1322997 Query 6912 TCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCA 6971 || |||| | ||||||| |||||| |||||||| |||||||| |||||||| | Sbjct 1322996 TCTTGATAAGGGCAGTCATAACACCACCAGCAGTTTCGATACCAAGAGATAGAGGTGTTA 1322937 Query 6972 CGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTT 7031 | || | || | || ||||| || ||| | ||||| || || || |||| Sbjct 1322936 CATCAAGAAGCAGTAGATCTTGTACTTCTTCAGACTTGTCACCATGTAGAATAGCAGCTT 1322877 Query 7032 GGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTAC 7091 | || | || || || || || || ||||| ||||| || | || |||| |||||| | Sbjct 1322876 GTACAGCAGCTCCATAAGCTACAGCTTCATCAGGGTTGATAGACTTGTTCAATTCTTTCC 1322817 Query 7092 CGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCA 7151 | ||||| | ||| | | | ||| || || || || || || |||||||| |||| Sbjct 1322816 CATTAAAGAAGTCCTGCAGTAACTTTTGGATCTTAGGAATACGCGTGGATCCACCAACCA 1322757 Query 7152 AAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAG 7211 ||||||| || | | | | |||||| || || | || || | || ||||| || | Sbjct 1322756 AAACGATATCGTGAATCTGAGCTTTATCCATTTTGGCATCGCGTAATGACTTTTCCACTG 1322697 Query 7212 GTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGG 7271 | || | | | ||| | || ||| || || ||||| || || | ||| || | Sbjct 1322696 GCTCGAGTGTTCCTCTGAAGAGATCAGCACAAAGCTCTTCAAATCGAGCTCTGGTGATTG 1322637 Query 7272 ATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCG 7331 | ||||| || |||| || || || | |||||||||||| || | | ||| | | || Sbjct 1322636 AGGTATAAAAGTCAATTCCCTCATAGAGCGAATCAATTTCGATACTAGCTTGAGTAGACG 1322577 Query 7332 AAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGT 7391 |||| || || || || || || || || || || | ||||||||||| ||||| | Sbjct 1322576 AAGACAAAGTGCGTTTCGCACGTTCGCAAGCTGTCCTCAAACGACGAAGAGCACGTTTAT 1322517 Query 7392 TACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTC 7451 | | | | ||||||||| | ||| ||||| || |||| | |||| || || Sbjct 1322516 TTGCAGTCAGATCTTTCTTGTATTTGCGTTTGAATTCTTGAACAAAGT---GATTGACCA 1322460 Query 7452 T-CGA--ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAA 7508 | ||| ||||||||||| || || | || || || || || || | ||||| |||| Sbjct 1322459 TACGATTGTCGAAATCTTCGCCGCCAAGATGAGTGTCTCCTGCTGTTGACTTGACCTCAA 1322400 Query 7509 AGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568 | || || |||| ||| | || | || |||||||| || |||||||| |||||||| | Sbjct 1322399 AAATGCCATCTTCGATGGTCAAAATTGAGACATCAAAGGTGCCACCACCAAGGTCAAAGA 1322340 Query 7569 TGAGTACGTT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 | || ||||| || || || || || ||||| | ||||| || || || || || Sbjct 1322339 TTAGGACGTTGCGCTCGGTGGTAGTT-TTTTTATCCAAGCCGTAAGCAATGGCGGCAGCG 1322281 Query 7628 GTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || ||||| || || ||||| || ||| |||| || | || || | || || || || Sbjct 1322280 GTGGGTTCGTTGATGATACGTAAAACA-TTCAAACCCGAGATGGTGCCAGCGTCCTTGGT 1322222 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTT 7746 || || || ||||| ||||| ||||| || || || || | || || | |||| | Sbjct 1322221 TGCCTGACGCTGCGAGTCGTTGAAGTAAGCAGGTACAGTGATCACGGCATTGCTGACACT 1322162 Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATC-- 7804 ||| || || || | || || | || ||||| || || ||||| |||| || Sbjct 1322161 CTTGCCAAGGTATGCCTCAGCAGTTTCCTTCATCTTTACCAGGACCAT---TGAACTCAC 1322105 Query 7805 -TCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 ||||||| | | | || ||||| || || || ||| |||| ||| ||||||| Sbjct 1322104 TTCTTCAG-GGAAGAAAGTCTTCGTCTCTCCTTTGTAATATACTTGAATTTTGGGTTT 1322048 >seq3761 Length=42113 Score = 163 bits (180), Expect = 4e-35 Identities = 288/415 (69%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 11233 ATTTCTTCACGTCCGTGAACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCG 11292 |||| |||||||| | | |||||||||| || | || || ||||||||| | || Sbjct 24003 ATTTGCTCACGTCCTTTCATATCAGGTAAATTCACATTTACTTCACGATCAAAACGTCCT 23944 Query 11293 GGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATT 11352 || |||||||| || || || | ||| | |||||| |||||| | |||| || ||| Sbjct 23943 GGACGTAATAATGCTGGATCTAGCACATCAACACGGTTAGTTGCAGCAATAATAATAATA 23884 Query 11353 TCA--GTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCAC 11410 || |||| |||| || ||||||||||| || | |||||| | ||||| || | Sbjct 23883 CCACTGTTTGATTCA--AACCCATCCATTTCGACTAGCATTTGGTTTAAGGTTTGCTCGC 23826 Query 11411 GCTCATCGTTTGCCGCA---AACCCATTCATACTTCTTTTCTTACCAATCGCATCAATTT 11467 | ||||| | | || || || | | | ||||| | |||| |||||||||| Sbjct 23825 GTTCATCATGACCACCAGAAAAACCG--CCTCCCCGTTTTCGT-CCAACGGCATCAATTT 23769 Query 11468 CATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATTCAAATATATCACGGACTC 11527 |||| ||||| ||||||||||| || || |||||| |||| |||||||| |||| Sbjct 23768 CATCAATAAAAATAATACACGGCGCATGTTTACGTGCTTGAGCAAACATATCACGTACTC 23709 Query 11528 TTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAACACTGAATAAAAG 11587 || ||||| || |||||||||||||| || || || ||| | || |||| Sbjct 23708 GAGAGGCCCCTACACCAACAAACATTTCAACAAAATCAGAACCTGAAATCGTAAAGAAAG 23649 Query 11588 GAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGG 11642 |||| | |||||| || || || || || || |||||||| |||||||| Sbjct 23648 GAACATTTGCTTCACCAGCAATGGCTTTAGCCAATAGGGTTTTACCCGTACCTGG 23594 >seq2331 Length=68774 Score = 127 bits (140), Expect = 3e-24 Identities = 221/319 (69%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 6680 TTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATT 6739 ||||||| || ||| | |||||||||| ||||||| ||| || | || | |||| Sbjct 21498 TTATCTTTGGCTGATACGTGTAAAATACCATCGGCATCAATATCAAATGTGACTTCAATT 21439 Query 6740 TGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTG 6799 ||||| |||| | ||||| | | ||||||| || | |||| ||| || | | Sbjct 21438 TGTGGCATACCACGTGGTGCTGGTTGAATACCATCTAGGTTAAATTGACCTAGCGATTTA 21379 Query 6800 TTATCCGTCGCCTTCTTACGTTCACCTTCATAG-ACTTTAATTGTCACCGCAGGTTGATT 6858 ||||||| ||| ||||||||||||| ||| || | ||| || ||||| | |||||| Sbjct 21378 TTATCCGCCGCACGTTTACGTTCACCTTG-TAGCACATGAATCGTTACCGCTGATTGATT 21320 Query 6859 ATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAAT 6918 ||||| || |||||||| | ||| | |||| ||| || ||||| ||| || ||| Sbjct 21319 ATCTTCAGCTGTTGAGAACACTTGGCTATGTTTAGTTGGGATAGTCGTGTTTTTCTCAAT 21260 Query 6919 AACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAA 6978 | | ||||| | |||||||| || || | ||||| || | || || || || | Sbjct 21259 TAATGATGTCATCACTCCACCCATGGTCTCAATACCAAGCGATAATGGCGTTACATCAAG 21200 Query 6979 GAGTAACAGGTCTTGAACA 6997 | ||| | ||||| |||| Sbjct 21199 TAATAATACGTCTTTAACA 21181 Score = 122 bits (134), Expect = 1e-22 Identities = 244/355 (69%), Gaps = 25/355 (7%) Strand=Plus/Minus Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA---- 7509 |||||||| |||||||||||||| || |||||||| |||||| |||||||| Sbjct 20727 GAATCGAAGTCTTCACCACCCAAATGGGTATCCCCATTAGTCGCTAATACTTCAAACGTT 20668 Query 7510 --GATAC------CTCCTTCAATGTTTAACAA-CGAAACATCAAACGTACCACCACCCAG 7560 | || || | ||||| || || || |||| ||| || ||||||||||| || Sbjct 20667 TTGTCACCATCGGCTTCGTCAAT-TTCAATAATGGAAATATCGAAAGTACCACCACCAAG 20609 Query 7561 GTCA-AAAATGAGTACGTTCG--TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGAT 7617 |||| ||| || ||| || || | | ||| ||||| | ||| ||||| | Sbjct 20608 GTCATAAACTGCAATCGTGCGATTACCCACATCT------TTATCTAAACCATACGCTAA 20555 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 || || || || ||||| ||||||||||| ||| | | ||||||||| ||| Sbjct 20554 TGCGGCAGCGGTAGGTTCGTTAATAATACGCTTTACA-TCTAAACCAGCAATACGACCCG 20496 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 ||||||| || ||||| || || | ||| |||||||| || || ||||| | || || | Sbjct 20495 CATCTTTTGTTGCTTGACGCTGTGCATCATTAAAGTAAGCAGGTACCGTAATAACGGCTT 20436 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 | || || | ||| ||||| ||| ||| | | ||||||||| |||| || Sbjct 20435 CAGTTACGGCTTCACCTAGATAGTCTTCAGCGGTTTTTTTCATTTTCTTAAGTAC 20381 >seq478 Length=2200664 Score = 120 bits (132), Expect = 4e-22 Identities = 192/273 (70%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 6641 TCATTCGTAATCGTAATCTTTTCG-GATTTACCCGAGGCCTTATCTTCAGCACTTACATT 6699 ||||| ||||| ||||||||| ||||| || | | || || |||||| ||| | Sbjct 643234 TCATTGGTAATAACAATCTTTTCCCGATTT-CCAGTTCCTTTGTCCTCAGCAGATACTTG 643176 Query 6700 CAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGC 6759 | ||||||||| ||||| | || || | || | |||||||||| ||||||| ||||| Sbjct 643175 TAGAATACCATTAGCATCGATTTCAAAGGTAACTTCAATTTGTGGTATACCCCTTGGTGC 643116 Query 6760 GGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACG 6819 | ||| || || || | ||| ||| |||| || | | ||| || | | | | ||| Sbjct 643115 TGGTGGGATGCCAGTAAGATCGAATTTACCCAGAAGATGGTTGTCTTTTGTCATTGGACG 643056 Query 6820 TTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGAT 6879 ||||||||| || |||| || || || | | |||||||||| || || || ||||| Sbjct 643055 TTCACCTTCGTATACTTGGATAGTTACTGTATGTTGATTATCAGACGCAGTAGAAAAGAT 642996 Query 6880 TTGTTCTTTCTTAGATGGAATCGTCGTATTTCT 6912 ||| |||||| | |||||| ||||| || Sbjct 642995 TTGCGATTTCTTGGTCGGAATCACGGTATTCCT 642963 >seq136 Length=3482212 Score = 111 bits (122), Expect = 2e-19 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 11444 TTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTG 11503 ||||||| |||| ||||| || ||||| ||||| | |||||||| || || |||| Sbjct 3066690 TTTTCTT-CCAACGGCATCGATCTCATCAATAAATAATATACACGGAGCATGTTTTCGTG 3066748 Query 11504 CCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACG 11563 ||||| | || ||||| || |||||| || || || || ||||||||||| | ||| Sbjct 3066749 CCAATGCGAACATATCTCGAACTCTTGATGGACCAACACCAACAAACATTTCCAAAAACT 3066808 Query 11564 ATGACCCCGA-ACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAA 11622 || || || ||||| ||||||||| || | |||||| ||| |||| ||||| Sbjct 3066809 CAGAACCTGATACACT-AATAAAAGGTACATTTGCTTCACCAGCTGTAGCTTTAGCTAAT 3066867 Query 11623 AGTGTTTTACCTGTACCTGGTTTACCT 11649 | |||||||| ||||| ||| |||| Sbjct 3066868 AACGTTTTACCAGTACCCGGTGGACCT 3066894 >seq19 Length=1763384 Score = 89.7 bits (98), Expect = 7e-13 Identities = 155/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 22567 GTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCACGAA 22626 || || ||||||||| |||| |||||||||||| ||||||||| | || || || ||| Sbjct 341253 GTAAACTATAGAGAAGCATATAATATGTTTGCATGTAATGGTATATTATTTAATCATGAA 341194 Query 22627 TCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAATAT- 22685 || | | || || ||||| || ||| ||||| |||| | | || || || Sbjct 341193 AGTCCTCGTAGAGGAGAGAACTTTGTTACAAGAAAAGTAACTAGATCTATAGCGAAGATA 341134 Query 22686 CAGTGCAGGTAAACAAAAATGTT-TATACCTTGGTAACCTAGATGCGAAACGAGATTGGG 22744 |||| |||| || || ||||| | | || || || ||||||| ||||||||||||| Sbjct 341133 CAGT-TAGGTTTAC-AAGATGTTCTTGAACTAGGAAATTTAGATGCTAAACGAGATTGGG 341076 Query 22745 GTCATGCACGCGATTACGTGAAATGTATGTGGAAAATAT 22783 | |||||| ||||| || || ||| | | || |||| Sbjct 341075 GACATGCAAAAGATTATGTTGAA-GTAAGAGAAACATAT 341038 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 22431 AAAAACGTGTAAA-TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489 ||||| |||||| ||||| || || || ||||| || || || || | ||||| | || Sbjct 341469 AAAAATCTGTAAAATTTTACCATGCGTCAACATCTGAACTTTATGGCAGAGTAACTCAAG 341410 Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 |||||||||||||| || || |||||||| |||||||| ||||| Sbjct 341409 TACCACAAAATGAAAAAACTCCATTTTACCCTCGTTCACCGTATGG 341364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635088666209560