Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3761 120 4e-22 seq418 86.0 8e-12 >seq3761 Length=42113 Score = 120 bits (132), Expect = 4e-22 Identities = 253/371 (68%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| || ||||| || | | || ||| || | |||||| || || ||||| Sbjct 23959 ACGATCAAAACGTCCTGGACGTAATAATGCTGGATCTAGCACATCAACACGGTTAGTTGC 23900 Query 15944 GGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || || | || |||||| ||||| || |||| |||||||| || | | ||| Sbjct 23899 AGCAATAATAATAATACCACTGTTTGATT--CAAACCCATCCATTTCGACTAGCATTTGG 23842 Query 16002 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTC 16059 || | ||||| || |||||||||| | | | | | ||| | | |||| || Sbjct 23841 TTTAAGGTTTGCTCGCGTTCATCATGACCACCAGAAAA--ACCGCCTCCCCGTTTTCGTC 23784 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | ||||||||||| |||||||| || | || || || || || || || ||| Sbjct 23783 CAACGGCATCAATTTCATCAATAAAAATAATACACGGCGCATGTTTACGTGCTTGAGCAA 23724 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | | ||| ||||| || ||| || |||||||||||||| || ||||| | | | | Sbjct 23723 ACATATCACGTACTCGAGAGGCCCCTACACCAACAAACATTTCAACAAAATCAGAACCTG 23664 Query 16180 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 || || | | ||| || ||||| | |||||| ||||||||| || | || || ||| Sbjct 23663 AA-ATCGTAAAGAAAGGAACATTTGCTTCACCAGCAATGGCTTTAGCCAATAGGGTTTTA 23605 Query 16239 CCCGTACCTGG 16249 ||||||||||| Sbjct 23604 CCCGTACCTGG 23594 >seq418 Length=3833963 Score = 86.0 bits (94), Expect = 8e-12 Identities = 207/308 (67%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 112272 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTAC 112331 ||| | |||| ||||||||| |||||| || || || || || || |||||||| Sbjct 2669156 GATTTATGGACAGCTATTCTTGTTTCTCAAGTTGAAACAGGAACTCCTTACATGCTTTAT 2669215 Query 112332 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAC 112391 ||||| ||||| | || ||||| | ||||| || ||||| || || Sbjct 2669216 AAAGATCATTGTAATCGTAAATCAAATCATCAAAATTTAGGGACAATCAAAAGCAGTAAT 2669275 Query 112392 CTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGC 112450 | |||||||||||| | ||| || ||| | |||||| | ||||| || || | || Sbjct 2669276 TTGTGTACAGAAATCGTACAATATTCCAGTC-CAGATGAAATCGCTGTATGCAATTTAGC 2669334 Query 112451 ATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTATGAAAAAC 112509 |||||||| | || || ||| | ||||| | |||||||||||| |||||||| Sbjct 2669335 TTCAATCGCAGTGAACATGTTTGTAAACTCCAG-TAATCAGACATTTGATTTTGAAAAAC 2669393 Query 112510 TCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTT 112569 | | |||| || |||| ||| || || || ||| | |||| ||| |||| || Sbjct 2669394 TGCGAAAAGTAACAAAAATTGTTACTTGTAATTTAGACAAAATTATCGATGTGAATTATT 2669453 Query 112570 ACCCCGTT 112577 | || ||| Sbjct 2669454 ATCCGGTT 2669461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620699266162480