Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3761 129 7e-25 >seq3761 Length=42113 Score = 129 bits (142), Expect = 7e-25 Identities = 255/371 (69%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| || |||||||| | | || ||| || | |||||| || || || || Sbjct 23959 ACGATCAAAACGTCCTGGACGTAATAATGCTGGATCTAGCACATCAACACGGTTAGTTGC 23900 Query 9251 GGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9308 || || | || |||||| ||||| ||| |||| |||||||| || | | |||| Sbjct 23899 AGCAATAATAATAATACCACTGTTTGATT--CAAACCCATCCATTTCGACTAGCATTTGG 23842 Query 9309 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTC 9366 || | ||||| || |||||||||| | | | | | ||| | | |||| || Sbjct 23841 TTTAAGGTTTGCTCGCGTTCATCATGACCACCAGAAAA--ACCGCCTCCCCGTTTTCGTC 23784 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 | ||||||||||| |||||||| || | |||||| || || || || || ||| Sbjct 23783 CAACGGCATCAATTTCATCAATAAAAATAATACACGGCGCATGTTTACGTGCTTGAGCAA 23724 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 | | ||| || || | ||| || |||||||||||||| || ||||| | | | | Sbjct 23723 ACATATCACGTACTCGAGAGGCCCCTACACCAACAAACATTTCAACAAAATCAGAACCTG 23664 Query 9487 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 || || | | ||| || ||||| | |||||| ||||||||| || | || || ||| Sbjct 23663 AA-ATCGTAAAGAAAGGAACATTTGCTTCACCAGCAATGGCTTTAGCCAATAGGGTTTTA 23605 Query 9546 CCCGTACCTGG 9556 ||||||||||| Sbjct 23604 CCCGTACCTGG 23594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589939803709160