Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_014792.1 Length=169285 Score E Sequences producing significant alignments: (Bits) Value seq2372 118 1e-21 >seq2372 Length=84335 Score = 118 bits (130), Expect = 1e-21 Identities = 306/463 (66%), Gaps = 10/463 (2%) Strand=Plus/Plus Query 141354 TTATTCAACTGAACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTG 141413 ||||| | || || ||||| || | ||| | | ||| |||||||||| || ||| Sbjct 73698 TTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTA 73757 Query 141414 TTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCA 141473 || || || | ||| ||||| ||||| ||||||||||| |||||| | | || || Sbjct 73758 TTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCC 73817 Query 141474 GCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAG 141533 || || || || | || ||||| ||||||||||| ||||| |||||||| | || | Sbjct 73818 GCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAA 73877 Query 141534 AACGGAATAACACCAGTATGCTTGACTTCACCCATACCGATTTTCGAA---CCTTCAGCA 141590 || |||||| ||||||||| |||| || |||| ||| | ||| ||| Sbjct 73878 AATGGAATACAACCAGTATGGAACGCTTCGCC---ACCGCGGATCGGACTTCCTAAGGCA 73934 Query 141591 CGAATCATGCCAACGTTGATACCGATACCCGCCCGCTTACTGATA--TATTCGATGATTG 141648 || ||| | || | || || || || || | ||| | ||||| |||| | || | Sbjct 73935 CGGATCTTACCGGCATTAATGCCAATTCCAG--CGCGTTGTGATACGTATTTAACAATAG 73992 Query 141649 AATTGGCGGTCTTATTGATTGACTTCAGGGAGTCAGCAGCTTCGATAACCACACAGGAAC 141708 | ||||| ||| ||||| | || ||| | || || | ||||| |||| Sbjct 73993 CGCTCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAAC 74052 Query 141709 TGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTGTC 141768 | ||||| || || || || | | |||||||| || || || || | |||| | Sbjct 74053 TAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAA 74112 Query 141769 TTGTGGATACTGCATCATAAAAACGGCAAACGTGCTTCAGACG 141811 ||||| | |||||||||||||| || || || ||||| Sbjct 74113 AGGTGGAAATCGCATCATAAAAACGTTTAATGTAATTGAGACG 74155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541546366681800