Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq2331 149 9e-31 seq1913 132 7e-26 seq3883 114 2e-20 >seq2331 Length=68774 Score = 149 bits (164), Expect = 9e-31 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 27981 AGCTGTAAAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCT 28040 || |||||||||||||| || ||| || |||||||||||||| |||| |||||||| | Sbjct 23637 AGTTGTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACG 23696 Query 28041 AACGGCATAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGC 28100 || ||||||||||| || ||||| || ||||| ||||| ||||| || ||||| || Sbjct 23697 CACCGCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGC 23756 Query 28101 ATCTTCTAAAGTTTCTTTATTCAAGACATTTACATTTAAATGTTGACCCCCTTCAAC 28157 |||||||| ||||| | || ||||| |||||||| ||||| || ||||| || Sbjct 23757 GTCTTCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTAC 23813 >seq1913 Length=212763 Score = 132 bits (146), Expect = 7e-26 Identities = 232/337 (69%), Gaps = 3/337 (1%) Strand=Plus/Minus Query 29671 GCAATTCTAGGAAGATTCAGAGTAATCACACCCAAGTTTTGACGACCATCGTGGATCTCT 29730 ||||| | ||||| ||| | | |||| || || || || | ||| ||||| || || | Sbjct 32699 GCAATACGAGGAATATTTAAACTAATTACCCCTAAATTATTACGCCCATCATGAATTTGC 32640 Query 29731 TCACCATGTTCATTTTCCCATCGACCCAAGAATGAACGACAACCCATGGGGGATTTATAA 29790 | |||| ||| ||| | ||| ||||| |||||| ||||| |||| |||| | Sbjct 32639 TGCCCATCTTC---TTCATAAACACCTAAGAAACTACGACAGCCCATTGGGGTTTTAAAT 32583 Query 29791 GAACCTGTGACCTTTACCACTTGATCGTAACTCATAATATCCGGATATATACGCTTAGAC 29850 || ||||| ||||| ||||||||||| ||| | | ||||| ||||| || || |||| Sbjct 32582 GATCCTGTTACCTTGACCACTTGATCATAATTAAGGATATCAGGATACATTCGTTTAGCG 32523 Query 29851 GAACACTCAAGAGCAAGTTGTTTTATATCGTAATGAGGATCCCAAGGATTCAGATTAAGA 29910 | |||||| | || | |||||| || |||| |||| || || |||||| Sbjct 32522 GCACACTCTAATGCTAATTGTTTAATCGTATAATTTTGATCTGTTGGCTTATGATTAACC 32463 Query 29911 CCGTCTTTAAGAGTGAATACAAGTTTAGGAAATACAGCAGTTTCTTTATCTTCACCAAGT 29970 || ||||| | | || || | ||||||||| || || |||| | || || || | Sbjct 32462 CCATCTTTGATCGCAAAGACTAATTTAGGAAAAACTGCCGTTTTATGATTTTTTCCTAAA 32403 Query 29971 CCATCAATACGGACTCTCAAGATCATTTCCTGAACTA 30007 ||| ||||||| || | |||||| ||| |||| || Sbjct 32402 CCAACAATACGCACACGTAAGATCGATTCTTGAATTA 32366 Score = 111 bits (122), Expect = 2e-19 Identities = 267/393 (68%), Gaps = 16/393 (4%) Strand=Plus/Minus Query 28837 TGTTTACCGTCATTAAATGGTCTTACATCCAATGCTCCG-ATATACCCACATACTCTACG 28895 |||||||| ||||||||||||| |||| ||||| | ||| |||||||| | ||| Sbjct 33539 TGTTTACCCGCATTAAATGGTCTAGCATCGGG-GCTCCCCAAATAGCCACATACACGACG 33481 Query 28896 CCTTACGTGTAGCTTTTTCTG--ATCGCGATTTCCACAAGAAGGACACTCATAACCTTTA 28953 | || | ||| ||| |||| |||| |||||| ||||| | |||||| Sbjct 33480 AGTAACCGACAC--TTTACTGGAATCGTGATTACCACAACTTGGACAAGTGAACCCTTTA 33423 Query 28954 CTTGTAGGGACGGTTTCCCCATTATAGCCACATACTAAGCATTTATCAACTGGGATATTT 29013 || ||| ||| ||| |||| |||||| | | || | ||||| ||| |||| Sbjct 33422 CTAGTACAAGAAAATTCACCACTATAACCACATTCATAACACTCATCAATAGGGGTATTC 33363 Query 29014 GAACCATAGTACGGG--GTTGTTTTGTAAGC-ATAATCCCACACATCTTCAAGGGCTTTA 29070 | ||||| || || | | | | ||| ||||||||| |||||||| | |||||| Sbjct 33362 GTCCCATAATAAGGAACGCGGCTAT---AGCTATAATCCCATACATCTTCTAACGCTTTA 33306 Query 29071 AGATTATTCTTTACATCTGGGAATTCCCCGTAAGAAATAAATCCACC-CGTACTAT-ATT 29128 ||||||| || | || ||| |||| || ||| | || || ||||| | | || || Sbjct 33305 AGATTATGCTGCATATTAGGGTATTCACCATAACAGATGAAGCCACCATTTGCGATCATA 33246 Query 29129 TTATAAACTGTCTTTCAAAATCGATCTTCTCGTATGGGTCACAATTATACTCTACATCTA 29188 ||| | | ||||||| || | || | || |||||| || | ||| ||||| | Sbjct 33245 GGATAGGC--TTTTTCAAACTCTAATTTTTGATAAGGGTCAACTTTTTTCTCCACATCCA 33188 Query 29189 GATGGAAACTATTCTGATAATAACCCTTTTCAT 29221 |||||||||||||| ||| ||||| || |||| Sbjct 33187 GATGGAAACTATTCGTATAGTAACCTTTATCAT 33155 >seq3883 Length=158444 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27985 GTAAAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCTAACG 28044 ||||| || |||| || || || |||||| ||| |||| ||| ||||| | ||| Sbjct 116550 GTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTACG 116491 Query 28045 GCATAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATCT 28104 ||||||||||| || ||||| || |||||||| || ||||| ||| || ||||||||| Sbjct 116490 GCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATCT 116431 Query 28105 TCTAAAGTTTCTTTATTCAAGACATTTACATTTAAATGTTGACCCCCTTCAAC 28157 ||| ||||| ||| || || || ||||| | || ||||| |||||||| Sbjct 116430 AATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAAC 116378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752552503373960