Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq3883 138 9e-28 seq1913 89.7 4e-13 >seq3883 Length=158444 Score = 138 bits (152), Expect = 9e-28 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 27375 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27434 ||||||| | |||||||| || ||| |||| ||||| || ||||| || ||| | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 27435 CGTTAAATCGAACAGCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGAT 27494 |||||| || || ||||| ||||| ||||| ||||| ||||| ||||| |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 27495 GTTTCTGTGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 27554 || | |||||| || | ||||| |||| || || ||||| ||||||||||||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 27555 CTTC 27558 |||| Sbjct 116384 CTTC 116381 >seq1913 Length=212763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 310/478 (65%), Gaps = 13/478 (3%) Strand=Plus/Plus Query 53232 ACTGAGAAAGAAGTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTTC 53291 ||||| ||||| ||||| || | ||| |||||||||||| ||||||| | | Sbjct 32239 ACTGAAAAAGAGTGTTATGATGCATTTCAATCGTTAGAATATGAAGTCAATAC--GCTAC 32296 Query 53292 A-ACT-CTAATGGACAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGG 53349 | ||| | |||||||||| || ||| |||| ||||| |||||| |||| || ||||| Sbjct 32297 ATACTGCGAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGGG 32356 Query 53350 AAGCACGTCTAGTACAGAAAGCAATACTGAAAGTACGCATGGATGGTTTAGGTATCAATA 53409 || |||| || | || || | || | || || || | ||||||||| | ||| Sbjct 32357 AATCACGCTTAATTCAAGAATCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAATC 32416 Query 53410 AACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGTGATGGCGTAAATATGAAAC 53469 | || || | || || ||| | || |||| | ||||| || ||| || | Sbjct 32417 ATAAAACGGCAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGATGGGGTTAATCATAAGC 32476 Query 53470 CAGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTATGT 53529 || |||| |||||| || || | ||||| | | ||| | ||| |||| |||| Sbjct 32477 CAACAGATCAAAATTATACGATTAAACAATTAGCATTAGAGTGTGCCGCTAAACGAATGT 32536 Query 53530 ATCCAGATTATATCAGCTATGATAAGGTTGTGGAAGTTACTGGTGACTATAAAGTTTCTA 53589 |||| ||| | | |||||| | || || | || || || | |||| | | Sbjct 32537 ATCCTGATATCCTTAATTATGATCAAGTGGTCAAGGTAACAGGATCATTTAAAACCCCAA 32596 Query 53590 TGGGCTGCCGTTCATTCCTAGCTG---CTACAGAAGATGG--TGAAA----CTGCCGGTC 53640 ||||||| ||| ||| ||| || | ||||||||| | || || || | Sbjct 32597 TGGGCTGTCGTAGTTTCTTAGGTGTTTATGAAGAAGATGGGCAGCAAATTCATGATGGGC 32656 Query 53641 GTAATAACTTAGGTGTTGTTTCTGTAAACTTGCCTAGAATTGCTATCGAAGCTGAAGG 53698 ||||||| ||||| || || | |||| | ||| | ||||| || ||||| |||| Sbjct 32657 GTAATAATTTAGGGGTAATTAGTTTAAATATTCCTCGTATTGCCATTGAAGCAAAAGG 32714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378572749840088