Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq739 120 2e-22 seq503 91.5 1e-13 >seq739 Length=1399493 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| || || || | |||| |||||||| |||||||| || | Sbjct 8202 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 8143 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || |||||||| || ||||| || | || ||||||||| | | Sbjct 8142 AAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 8083 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||| || || || |||| | ||| || |||| Sbjct 8082 GAATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAA 8023 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||||||||| || || || || |||||||||||||| Sbjct 8022 CTTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| || || || | ||| ||||||||||||||||| || | Sbjct 7260 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 7201 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || || ||||| || ||||| || | || ||||||||| | | Sbjct 7200 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7141 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||| || || || |||| | ||| || |||| Sbjct 7140 GAATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAA 7081 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||||||||| || || || || |||||||||||||| Sbjct 7080 CTTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 109 bits (120), Expect = 4e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| || || || | ||| ||||||||||||||||| || | Sbjct 7032 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 6973 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || |||||||| || ||||| || | || ||||||||| | | Sbjct 6972 AAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 6913 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| ||| || |||| | ||| || |||| Sbjct 6912 GAATACCTTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAA 6853 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGA 34990 | || | || || ||||| || || | ||||| || ||||||||||| || ||||| Sbjct 6852 CTTCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTTGGTAGA 6795 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| || || || | ||| ||||||||||||||||| || | Sbjct 7488 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 7429 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || || ||||| || ||||| || | || ||||||||| | | Sbjct 7428 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7369 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||||| || || |||| | ||| || || | Sbjct 7368 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7309 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || || || || || |||||||||||||| Sbjct 7308 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7260 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| || || || | |||| |||||||| |||||||| || | Sbjct 7944 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7885 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || || ||||| || ||||| || | || ||||||||| | | Sbjct 7884 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7825 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||||| || || |||| | ||| || || | Sbjct 7824 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7765 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || || || || || |||||||||||||| Sbjct 7764 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7716 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | ||||| || || || | ||| |||||||| |||||||| || | Sbjct 7716 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTG 7657 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || || ||||| || ||||| || | || ||||||||| | | Sbjct 7656 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7597 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||||| || || |||| | ||| || || | Sbjct 7596 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7537 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || || || || || |||||||||||||| Sbjct 7536 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7488 >seq503 Length=216272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || || || || | ||| |||| ||||| ||||| || ||||| Sbjct 161072 TTCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAA 161013 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || || || ||| |||| | || ||||| || ||| || ||| || Sbjct 161012 AATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTTTGCTTTTACATT 160953 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||||| || || ||||| || | || || |||||||| || || |||||||| Sbjct 160952 TTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCAC 160893 Query 34970 AAAGATCTGCATA 34982 || || |||||| Sbjct 160892 GAAAATTTGCATA 160880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324611605972152