Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq320 93.3 6e-14 seq1879 84.2 3e-11 >seq320 Length=1637695 Score = 93.3 bits (102), Expect = 6e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 104867 GAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAATGAAATTGGTGTT 104926 || || |||||| | || | ||| | |||||| | || |||| | ||| | ||| Sbjct 153449 GAGTTGTTATGGTTTATTAGAGGATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTC 153508 Query 104927 AAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCACTT-TCG 104985 | ||||| ||| || ||||||| |||| |||| |||||||| || ||| | | Sbjct 153509 CACATATGGGATGCAAACAGTTCACGCGAGTTCCTAGACTCTTGTGGCTT-CACAGATAG 153567 Query 104986 AAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACA 105030 |||||||| ||||||||||| |||||||||||||||||||||| Sbjct 153568 GAAAGAAGGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACA 153612 >seq1879 Length=203888 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 126591 CGTATACCAGAAATTGGAGACAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 126649 ||||| ||| ||||||| || |||||| |||| || |||| | ||||||| || ||||| Sbjct 46677 CGTATTCCACAAATTGGTGATAAATTTGCTTCTCGGCATGGAC-AAAAAGGTACCTGTGG 46735 Query 126650 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCGATATTAT 126709 || || |||||| |||||||| ||| || |||| | || || || ||||| Sbjct 46736 AATTCAATACAGACAAGAGGATATGCCATTTTCATGTGAAGGTCTCACGCCAGACATTAT 46795 Query 126710 AATTAATCCAAATTGTATACCGTCAAGAATGACCATAAATCAAATAATTG 126759 ||||||||| || ||| || || | ||||| || ||| |||||| Sbjct 46796 AATTAATCCTCATGCTATCCCATCGCGTATGACTATTGGTCACTTAATTG 46845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658357449207640