Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq418 178 1e-39 seq1274 147 2e-30 >seq418 Length=3833963 Score = 178 bits (196), Expect = 1e-39 Identities = 228/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| ||||| ||||||| || | ||| || | ||||| |||||||||||||||||| Sbjct 2668765 TTACCAATATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAA 2668706 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 ||||| || | | | ||||||| |||||| ||||||||||| | ||||| || ||||| Sbjct 2668705 TATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 2668646 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || ||||| | |||||| | | |||||| |||| |||| || || | || Sbjct 2668645 TTGTATACTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 2668586 Query 48450 CTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 | || || |||| ||| | || | || | || |||||||| || ||| || Sbjct 2668585 GTGCCTCTTGCTCGAATACAATGTACATTAAGT-CCAATACCACCAGCTGATTTGCTAAT 2668527 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||| | ||| | |||||||||||||| ||||| |||||||| |||| ||| Sbjct 2668526 AAGTGCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAG 2668467 Query 48569 TAGAAAACAACT 48580 || ||||||||| Sbjct 2668466 TAAAAAACAACT 2668455 Score = 156 bits (172), Expect = 5e-33 Identities = 208/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 47247 ttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaatgttttt 47306 ||| ||||||||| ||||| | || | |||||| | || |||||| | | | Sbjct 2670169 TTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTCAGATCTCGT 2670110 Query 47307 aaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTA 47366 || | ||||||||| || | |||||| |||||||| | ||||| | ||| |||||| Sbjct 2670109 AATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATTA 2670050 Query 47367 CTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGC 47426 || ||||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||| Sbjct 2670049 CTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGATGCCGTTGGC 2669990 Query 47427 ATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGT 47486 || | || | |||||| |||||| ||||||| ||| || | | Sbjct 2669989 ATAGGGGCGATTAATAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTCTTTCAGAATT 2669930 Query 47487 TTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 |||| | ||| | || | |||| ||||||||| | ||||||||| | ||| Sbjct 2669929 GTCCAGTTCCATAAATTAGTTGGAGTAACATTCCACATATCATATTGTAAAAT 2669877 Score = 116 bits (128), Expect = 4e-21 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| |||| |||||||||||||||||||||||||| | ||||| |||||||||| Sbjct 2667926 CACTAAAGCTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 2667867 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 | |||||||||||||| | || || ||| || || |||| ||||| | | ||| Sbjct 2667866 TCGCATAATCTGGATGTTTAGTAGT-CATAGTTGCAGCAGTTTCAGCTGCAAGATTGTCT 2667808 Query 49035 AATTCTTTAGTAGTTACACCTGTATATA 49062 ||||| || |||||||||| ||||| Sbjct 2667807 AATTCAACGGTGGTTACACCTGAATATA 2667780 Score = 116 bits (128), Expect = 4e-21 Identities = 181/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 |||||||||||| | || | ||| | | | ||| | || |||||||||||| |||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 | |||||||| || || || ||||| ||| | ||| ||||| ||| || Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 | | | || | ||||||||| | ||| ||||||||||||| ||| | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCA 48818 || | ||| | |||| | ||| ||||||||||| || || || |||||| ||||| Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 48819 TTAATAATTGATGAATTTA 48837 | ||| |||| ||||||| Sbjct 2668143 TAAATTATTGCAGAATTTA 2668125 Score = 105 bits (116), Expect = 8e-18 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| | || | ||| || || |||| ||| |||||||| | |||| |||| | | | Sbjct 2669358 ACAAACATGTTCACTGCGATTGAAGCTAAATTGCATACAGCGATTTCATCTGGACTGGAA 2669299 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 ||||||| ||||| | ||| | ||||| | |||||| || || |||||||||||||| Sbjct 2669298 TATTGTACGATTTCTGTACACAAATTACTGCTTTTGATTGTCCCTAAATTTTGATGATTT 2669239 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 ||| ||||| || || |||||||| |||| ||||| ||||| | |||| Sbjct 2669238 GATTTACG--ATTACAATGATCTTTATAAAGCATGTAAGGAGTTCCTGTTTCAACTTGAG 2669181 Query 48043 ATTCAATGATAGATTTCCA 48061 | ||| |||| | |||| Sbjct 2669180 AAACAAGAATAGCTGTCCA 2669162 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 ||||||| ||| | || || |||||| ||||||||||| | ||| |||||||| | | Sbjct 2670530 ATATGAACATTCATTGACTGTGACTGATCTATAAATGCACCACGATCTGCTGCCATTTTT 2670471 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199 || || ||| | |||||||| ||||| || |||||||||| Sbjct 2670470 AATATTACCTTCTGTGGTATTTCCCAAACGGTTTTATAAA 2670431 >seq1274 Length=440581 Score = 147 bits (162), Expect = 2e-30 Identities = 150/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 19223 TATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAG 19282 ||||| | | ||||| ||| ||||| | |||||||||||| || | ||||||||| | Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 19283 CCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTT 19342 | | ||||| || || ||||| | ||| || |||| |||||||| || ||||| || Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 19343 CGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAA 19402 |||| | ||| |||||||| ||||||||| ||| ||||| |||||||| ||||| | Sbjct 124566 CGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 124625 Query 19403 TAAAATGTTTTTCATC 19418 | |||||||| ||||| Sbjct 124626 TGAAATGTTTCTCATC 124641 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 ||||||||| |||| |||||| || ||||||| |||||| ||| | ||| Sbjct 123709 CCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATAAGTGTACAG 123768 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||||||||| | || |||||||| || || || | |||||||||||| || || || Sbjct 123769 TTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAATTCTTGTTCAATTTTGACG 123828 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 || ||| ||||| ||| || | ||| | || | || || |||||| ||| Sbjct 123829 GCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTTTGTACAATATGTTTGAAC 123888 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCT 18985 ||||||||||| ||||||||||||| ||||| Sbjct 123889 ATCAAACATGCGAAATCACAATGTAATCCCT 123919 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 ||||||| | ||| ||||| ||||| |||||||| || || || |||||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTatttttattttctttaagaa 19567 ||| || ||| | |||| |||||||| | ||| |||||| | ||||||||| || | Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTTTCTTTCAGTA 124861 Query 19568 taggttccattttttgaaaaataataatttcttttcAA 19605 ||||| | || | || || | |||||||| || Sbjct 124862 ATGGTTCTAATTCTGGATTAAATCCATTTTCTTTTAAA 124899 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||||||| ||||||||| || | ||| | |||||||| || || ||||| || || Sbjct 123511 CATTACTCCCCATTTTTGATACTCTCCTACTTTCTTTTCAAAAAAGTTTGTTTTACCTTC 123570 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 ||| || || |||||||||||||| ||||||| Sbjct 123571 TAAAGAGATGTGCTCCATAAAATCAAACGGATTTT 123605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562069740464760