Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq2372 333 5e-86 seq1614 91.5 3e-13 seq916 91.5 3e-13 seq3995 89.7 9e-13 >seq2372 Length=84335 Score = 333 bits (368), Expect = 5e-86 Identities = 721/1076 (67%), Gaps = 6/1076 (1%) Strand=Plus/Plus Query 207864 TCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTTG 207923 || || ||||| || | ||||| | |||| ||| || || || || |||||||| Sbjct 71255 TCAATTTGACCGACTAAATAAGAGCTGATTTCTGATTCTTGTGGGGCGACTTGAACGTTA 71314 Query 207924 TCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTGAATGGAAGA 207983 || | |||| ||| |||||||||||||| || |||||| || || || | Sbjct 71315 TCTGAGACCAACCAATTATTAATCCATGGAATAGGATTAGAGCGTGTCGCAAAAGGTAAG 71374 Query 207984 TCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTGGCAGAGGATC 208043 || || | || ||||||||||| |||||||| || |||| ||| || || | ||| Sbjct 71375 GGTAAGCCCACTGCTTGCATACGGATATTGGTAATATATTCAATATATTGACACAAGATA 71434 Query 208044 TCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCTTTTTCT 208103 ||| || |||||||||||||| || || ||||| || || ||||| ||||| ||| Sbjct 71435 TCTCGATTTAGACCGATCATTGATCCGCCTGAAAACAGGTAATCCGCCCAATCTTTCTCT 71494 Query 208104 TGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGCTGCAATCTCA 208163 || | || | || |||| || || ||| ||| | |||||| || || ||| Sbjct 71495 TGATTTGCTGCTTGGACAAACAGATCATAGCACTGTTGTTGGCACTCTTTAGCGATATCA 71554 Query 208164 GCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTACCAACC 208223 ||||| ||||||||||||| |||| | | | || || || |||||||| Sbjct 71555 GCCATTTCTGGATCATCTTCACCACTGCGTAACGTATTAATCATAAATTGAGTACCGGTA 71614 Query 208224 ATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCCATCAGC 208283 | |||||| ||||| || || || |||| ||| || || || || || |||||||| | Sbjct 71615 AGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAATTTTGGCATTTCCTTCCATTAAT 71674 Query 208284 TTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGCTTCAAGT 208343 | ||||||||||| || || ||||| || ||| || || || |||||||||||||| Sbjct 71675 TCGCGTTCGGCAAAGGCAAACGAGCAGGCAAAGCTAACATAAAATCGAATAGCTTCAAGC 71734 Query 208344 GAGTTGA--TAGATTGCAGAGCCAGGTACAGTGCTTTCTTAATAGCACGAAGATTAACAT 208401 | |||| ||| | || || || ||| |||||| | |||| | |||| Sbjct 71735 GCATTGACGCTCATTAAACAG--AGATAAAGTTTTTTCTTTAATTCACGCAAGTTAATGG 71792 Query 208402 TAACCTTCTCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATAGTACTGGTTGATCA 208461 ||| | | ||||| | | ||| |||| ||| | ||| ||| | || | Sbjct 71793 TAATGGTTTTACCATTAATTTGATGGGTACCCGTACCTAATAAATGGTAGTAATTAGTGG 71852 Query 208462 AGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCTTGATATGTTCGT 208521 | ||| | | || || ||| | | | | | |||||||| | ||| | | | Sbjct 71853 TAGTAATTAAATCATCATAATAACGAGCGATATCCGTTGCACGTTTTTGGATCTCCTGAT 71912 Query 208522 TATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGAG 208581 ||| |||| |||||||| | | |||||||| || || || || | || || || | Sbjct 71913 TATTAACAATATCATCAAAAATCAAAGAAGGATCATTGACAATATTGCGAATAATATGCG 71972 Query 208582 TATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGCT 208641 ||||| || || || || ||||| || ||| || || |||||||||| | | Sbjct 71973 TATAGGAGCGCGAATGAATAGTCTCAGAAAATGACCAAGTTTCTACCCATGTTTCTAATT 72032 Query 208642 CTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGAGTCCA 208701 | |||||||| | || | |||||| || ||||||| ||| || || || ||||| | Sbjct 72033 CAGGGATAGAAATTAGAGGTAATAATGCCACATTTGGACTACGTCCTTGAATGGAGTCTA 72092 Query 208702 GTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCCA 208761 || || |||||||| | |||||||| || | ||||| || || || |||| | Sbjct 72093 ATAAGGTTTGATATTTTAAATTACTGATAAAGATATGTTTTTCATGTTCAGGTAGCTGCT 72152 Query 208762 TGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTT 208821 || |||||||| || | | ||| || ||||| |||||||| || || || |||| Sbjct 72153 GATAATCAATACGATCTTTAGTAATATCCACCTCTTCTGGACGCCAAAAAAAGGAGAGTT 72212 Query 208822 GTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTGA 208881 |||| ||||| | ||| ||||| |||||||| || || || || || || | ||||| | Sbjct 72213 GTTTTTCAATCAATTTTTCAAACATCTCATATTTTTGCTGATCATAGCGTGCTACGTTCA 72272 Query 208882 CGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTTGGTTGAAA 208937 | |||||| | |||||| | || | | |||||| || | || ||| ||||| Sbjct 72273 CAGGTTGACCTAAGAACATTGGCTCCTTAAGTTGATCATTGTAGTGTTG--TGAAA 72326 >seq1614 Length=125919 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 16837 ACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 16894 || || |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 76847 ACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 76904 >seq916 Length=289624 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 16837 ACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 16894 || || |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 195813 ACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 195870 >seq3995 Length=10512 Score = 89.7 bits (98), Expect = 9e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 16119 AATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTAT 16178 ||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||| Sbjct 8952 AATGGCGTCCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 9011 Query 16179 CCA-CTGAGCTAAG 16191 ||| |||||||||| Sbjct 9012 CCAGCTGAGCTAAG 9025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911031090327880