Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1274 114 2e-20 >seq1274 Length=440581 Score = 114 bits (126), Expect = 2e-20 Identities = 167/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 37195 AACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCttt 37254 ||||| |||||||| || | |||||| ||| || | |||||||||||||||||||| Sbjct 124111 AACCT-CATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTT 124169 Query 37255 ttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAA 37314 |||| | ||| || || || |||||| || ||||||||||||||| ||||| |||| Sbjct 124170 TTTTCAGCCAGAAAATAGCGGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAA 124229 Query 37315 ATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAAT 37374 |||| || | |||| | || || | ||| | || | ||||| ||| || ||| | Sbjct 124230 ATGCAACCACACGTTCAGGAAATGTGGCACTCTCATGATTTATCCAATTTAATGCCCAGT 124289 Query 37375 CTGCCTTTAATTTAACACAT--TCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 || ||| ||| ||| | ||| ||||||| || || || ||||||| Sbjct 124290 TAGCTTTTTTCGCAACGCATGGTAAAT--TTTCAATCGCATTGAACAGAAAGT 124340 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 37438 TATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAG 37497 ||||||| ||||| |||||||| | | |||||||| ||||| | |||||| || | Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 37498 CTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCT 37557 | | ||||||||||| ||||| | || || | || ||| || || | | ||| | | Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATC-GT 124564 Query 37558 TAGCTAAG-TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTT 37616 | | ||| || |||||||| || |||||| ||| |||||||| || | |||| | Sbjct 124565 TCGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGAT 124624 Query 37617 ATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCA 37655 || |||||| | |||||| | | || | ||||| ||| Sbjct 124625 ATGAAATGTTTCTCATCACTAGTCAAATGATTCCAGTCA 124663 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 36827 TTAAAAATCTTCATCTAAC-GTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTT 36885 |||||| || ||| |||| ||||| || |||| ||| | ||| |||||| || Sbjct 123466 TTAAAATTCAGCAT-TAACTGTAAAATTGCTTTCAACTTTATCTTGCATTACTCCCCATT 123524 Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 ||||||| ||||| ||| |||| ||||| ||||| || ||||||| || || | | Sbjct 123525 TTTGATACTCTCCTACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTAAAGAGATGTGCT 123584 Query 36946 CCATAAAATCAAATGGATT 36964 ||||||||||||| ||||| Sbjct 123585 CCATAAAATCAAACGGATT 123603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592275641386360