Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_017969.1 Length=108853 Score E Sequences producing significant alignments: (Bits) Value seq3883 125 5e-24 seq1913 98.7 7e-16 >seq3883 Length=158444 Score = 125 bits (138), Expect = 5e-24 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 27053 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27112 ||||||| | |||||||| || ||| |||| ||||| || ||||| || ||| | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 27113 CATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 27172 ||||| || || || || ||||| ||||| || || || || ||||| |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 27173 GTTTCTGCGCATCCAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCAC 27232 || | ||||| || | ||||| ||||||| |||||||| ||||||||||||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 27233 CTTC 27236 |||| Sbjct 116384 CTTC 116381 >seq1913 Length=212763 Score = 98.7 bits (108), Expect = 7e-16 Identities = 514/805 (64%), Gaps = 28/805 (3%) Strand=Plus/Plus Query 52588 GGAGATATTCATTTCCATGACTTGGATTAT--TCCCTTTTGGGC-ATGACTAACTGTTGT 52644 || || ||||||| ||||| |||||||| |||||||| | ||| |||||| Sbjct 31921 GGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTATGTTTAACTGCATG 31980 Query 52645 CTAGTAGCTCTGGAAGATATGCTAAAAAATGGTATGAAGGTTGGTAATGCTGAAATTAGC 52704 ||| | | | | || | ||||||| || ||| | || | || |||||||||||| Sbjct 31981 CTAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTGAAATTGAA 32040 Query 52705 ACTCCAAACTCTATCACTACTGCGGCGGCTATTACTGCTCAGATTATCACTCAGGTTAGC 52764 | || || || || | ||||| | ||| | || || |||||||| | || || | Sbjct 32041 CCGCCTAAATCAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCCAAGTAGCC 32100 Query 52765 TCCCATCAGTATGGTGGTACTTCTGTAGATCGCCTTGATGAAGTATTAGCCCCTTATGT- 52823 |||| |||||||| || | | |||| |||||||||| | || | ||| Sbjct 32101 AGCCATATTTATGGTGGCACCACCATTAATCGTATTGATGAAGTTCTGGCTAAATTTGTA 32160 Query 52824 TCGTAAATCCTATGACAAAAATCATGCGTTT-GCAAAACGTTGGACTAAGGATGA-AGCC 52881 ||| ||| ||||| ||| ||| | ||| | || || ||| | ||| | | Sbjct 32161 TCGAAAAGT-TATGAAAAACATCGT-CGTATAGCCGAAGAGTGGCAAATTCCTGATATCG 32218 Query 52882 AAAGCATCAGTAATGGCTACGGAGATGACTGAAAAAGAAGTCTATGACGCTTGTCAGGGT 52941 ||| | | ||| | ||| | |||||||||| ||||| || | ||| Sbjct 32219 AAAACTACGCTAA--GTCACGTA-----CTGAAAAAGAGTGTTATGATGCATTTCAATCG 32271 Query 52942 TTAGAATATGAAATCAATACCATGTTCA-ACT-CTAATGGTCAGAGTCCATTTATTACCT 52999 |||||||||||| ||||||| | || ||| | ||||| |||| || ||| |||| | Sbjct 32272 TTAGAATATGAAGTCAATAC--GCTACATACTGCGAATGGACAGACCCCTTTTGTTACAT 32329 Query 53000 TTGGTTTTGGTCTAGGAACTTCCTGGGAAGCACGTCTAGTACAGAAAGCAGTACTGAAAG 53059 |||| |||||| |||| || |||||| |||| || | || || | | | | Sbjct 32330 TTGGATTTGGTTTAGGCACCAGTTGGGAATCACGCTTAATTCAAGAATCGATCTTACGTG 32389 Query 53060 TACGCATGGATGGTTTAGGTATCAATAAACGTACAGCTATCTTCCCGAAACTGGTATTTG 53119 | || || | ||||||||| | ||| | || || | || || ||| | || |||| Sbjct 32390 TGCGTATTGTTGGTTTAGGAAAAAATCATAAAACGGCAGTTTTTCCTAAATTAGTCTTTG 32449 Query 53120 TACTTCGCGATGGCGTAAATATGAAACCAGGAGATGTTAATTATGACATCAAGAAGTTAG 53179 | ||||| || ||| || ||| |||| |||||| || || | |||| Sbjct 32450 CGATCAAAGATGGGGTTAATCATAAGCCAACAGATCAAAATTATACGATTAAACAATTAG 32509 Query 53180 CTATGAAATGTACTGCTGAACGTATGTATCCAGATTATATCAGCTATGACAAGGTTGTAG 53239 | | | ||| | ||| |||| |||||||| ||| | | ||||| | || || Sbjct 32510 CATTAGAGTGTGCCGCTAAACGAATGTATCCTGATATCCTTAATTATGATCAAGTGGTCA 32569 Query 53240 AAGTTACTGGAGACTATAAAGTTTCTATGGGCTGCCGTTCATTCCTAGCTG---CTGCAG 53296 | || || ||| | |||| | |||||||| ||| ||| ||| || || || Sbjct 32570 AGGTAACAGGATCATTTAAAACCCCAATGGGCTGTCGTAGTTTCTTAGGTGTTTATGAAG 32629 Query 53297 AAGATGG--TGAAA----CTGCTGGCCGTAATAACTTAGGTGTTGTTTCTGTAAACTTGC 53350 ||||||| | || || ||| |||||||| ||||| || || | |||| | | Sbjct 32630 AAGATGGGCAGCAAATTCATGATGGGCGTAATAATTTAGGGGTAATTAGTTTAAATATTC 32689 Query 53351 CTAGAATTGCTATCGAAGCTGAAGG 53375 || | ||||| || ||||| |||| Sbjct 32690 CTCGTATTGCCATTGAAGCAAAAGG 32714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348181209015986