Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq2372 562 2e-155 >seq2372 Length=84335 Score = 562 bits (622), Expect = 2e-155 Identities = 1472/2224 (66%), Gaps = 55/2224 (2%) Strand=Plus/Minus Query 70552 GTAACAAAACGTGATGGTGGATTAGCACCTTTGGATTTAGATAAGATCCATAAAGTAATC 70611 || || ||||||||||| | || || | ||||||||||| || ||| || ||| Sbjct 74701 GTGACTAAACGTGATGGCAAAAAAGAGCCGATTGATTTAGATAAAATTCATCGGGTCATC 74642 Query 70612 GCATGGGCTGCAGAGGGACTTGAAAATGTCTCAGTATCTCAAGTTGAATTGAAATCTCAT 70671 | |||||||| || || || ||||||| || || |||||||||||||| || ||| Sbjct 74641 ACTTGGGCTGCTGAAGGTCTGCAAAATGTATCTGTTTCTCAAGTTGAATTACGCTCCCAT 74582 Query 70672 ATCCAATTTTATGAAGGTATGAAGACAGAAGATATTCACGAAATAATCATTAAAGCAGCA 70731 || ||||||||| | || || || ||| || || || || | ||| || || || Sbjct 74581 ATTCAATTTTATAATGGAATTAAAACATCTGACATCCATGAGACAATTATCCGTGCTGCT 74522 Query 70732 GCAGATTTAATATCGGTTGACACTCCTGATTATCAGTATCTCTCATCTCGTTTAGCCGTA 70791 || ||| | || || || || || |||||||| ||| | | || | ||||| | Sbjct 74521 GCGGATCTGATTTCACAAGAAACCCCAGATTATCAATATTTAGCCGCTAGATTAGCGATT 74462 Query 70792 TTTCATTTACGTAAACAAGCCTATGGTGATTTTGTACCACCTCGCCT-TATCAACCATAT 70850 ||||||||||||||| |||| ||| | | ||| ||||| || ||| | | | Sbjct 74461 TTTCATTTACGTAAAAAAGCTTATAATCAGTTTACCCCACCCAAACTCTATGATCATGTT 74402 Query 70851 AGCTAAGT--TGACAGATAGTGGTCATTATGATAAAGAAATTCTTGAAGATTTTACCATT 70908 | | || | || |||| || | |||||||||| | | ||| |||| || Sbjct 74401 ACCAAATTAGTGGCAGAA---GGCCGTTATGATAAACATTTACTTACGGATTACACGCCA 74345 Query 70909 GGTGAAATTGAAGAATTAGGTAATTACATTCAGCATGACCGTGATATGAATATTGCCTAT 70968 | ||| ||| || |||| || | ||| | ||| || || ||||| | ||||| Sbjct 74344 GATGAGTTTGCCGAGTTAGATAGCTTTATTGACCATTGGCGAGACATGAACTTCTCCTAT 74285 Query 70969 GCAGGTATTAAGCAATTAATCGGTAAGTATTTGGTTCAGGACAGAGTTAATGGTATTATC 71028 || | | || || || ||||| || | |||||| | | || | || ||| Sbjct 74284 GCGGCAGTAAAACAGTTGGAGGGTAAATACCTCGTTCAGAATCGGGTCACAGGCGATATT 74225 Query 71029 TTTGAAACCCCTCAAATGCTTTATATGCTTGTTG--GTATGTGTTTATACTCTAAAAAGT 71086 | ||| | | | ||| | |||||||| | |||| | ||| | | | || || | Sbjct 74224 TATGAGAGCGCGCAATTTCTTTATATCTTAGTTGCCGCATGCCTATTTGCT-----AACT 74170 Query 71087 AT--AGCGGCAAAGTTCGTATGAATTACATCAAAGAGTGGTATGATGCAACAAGTACATT 71144 || | || | | ||| | |||||||| ||| | |||||||| | || || Sbjct 74169 ATCCAAAAGCGACG--CGTCTCAATTACATTAAACGTTTTTATGATGCGATTTCCACCTT 74112 Query 71145 TGAGCTATCATTACCAACACCTATTATGGGTGGTGTACGTACTCCAACAAGACAATTTAG 71204 | | | || |||| || || ||||||| || || || |||||||| | || ||||| Sbjct 74111 TAAAATTTCCCTACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAG 74052 Query 71205 TAGTTGTGTAAAGATTGACAGTGGCGATAGCCTAGATTCAATTAATGCCTCTTCAAGTTC 71264 | |||||| |||||| | | ||||| || || |||||||||||| | | || | Sbjct 74051 TTCGTGTGTATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAGCGC 73992 Query 71265 AATTGTTAAGTATGTATCCAAACGTGCAGGTATCGGTATCAATGTTGGCAAAATTCGTGC 71324 |||||||| || ||||| |||| || || || || || |||| || || || ||||| Sbjct 73991 TATTGTTAAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGC 73932 Query 71325 ATTAGGAAGTCCTATACGCAATGGTGAAGCAGTTCATACTGGTTTAATACCATTCTTAAA 71384 ||||||||||| || ||| ||| ||||| | |||||||||| || ||||| | || Sbjct 73931 CTTAGGAAGTCCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAA 73872 Query 71385 GCATTTCCAAACAGCAGTCAAATCTTGCTCTCAGGGAGGCTTACGTGGTGGTGCTGCTAC 71444 | | ||||||||||| || ||||| || ||||| || || |||| || || || || || Sbjct 73871 GTACTTCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAAC 73812 Query 71445 AGCGTTCTACCCTATGTGGCATTTAGAAGTTGAAAGCCTTTTAGTATTGAAAAATAACAA 71504 | || || || | |||||||||||||| |||| | | || || | |||||| Sbjct 73811 GGTATTTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCG 73752 Query 71505 AGGTGTTGAAGATAACCGTGTACGTCATTTAGACTATGCTGTGCAATTCAATAAGCTTAT 71564 ||| ||||||| || || || || |||||||| |||| || ||| | ||||| | || Sbjct 73751 TGGTATTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAAT 73692 Query 71565 GTACCAACGATTGATTACAGGTGGCAATATTACATTGTTCTCACCTAATGCAGTTGAAGG 71624 |||||| || || |||| | | ||||| | |||| ||| || || | Sbjct 73691 GTACCAGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGA 73632 Query 71625 TTTATATGACTCATTCTTTGCCGACCAAGATAAGTTTGAAAAGTTATATACTGAAGCTGA 71684 | | |||| | ||||||||||| ||||| | |||||| | ||| | | ||| Sbjct 73631 TCTGTATGCGGCTTTCTTTGCCGATCAAGACGAATTTGAACGTCTTTATCTTCACTATGA 73572 Query 71685 AGGTAATCCTATGATTATCCAAAAG-TCAGTAAAAGCTAGTGACTTATTTACATTGTTTG 71743 | || | | | |||| | ||| ||||| | ||| | ||| | || || Sbjct 73571 ACACGATAGCAACA-CACGCAAACGCGAAGTCAAAGCGATTGAGCTGTTTTCTTTATTAA 73513 Query 71744 CACAAGAGCGAGCAGGTACAGGTCGTATCTATCTTCAAAACGTAGATCACTGTAATACCA 71803 ||||| || || || || ||||| ||| ||||||| | ||||| ||||||||| Sbjct 73512 TGCAAGAACGCGCCTCAACGGGACGTATTTATATTCAAAATATTGATCATTGTAATACCC 73453 Query 71804 ATAGCCCATTTATTGCAGAAGTTGCCCCTATTCGTATGAGT--AACTTATGCCTTGAAAT 71861 ||||||| ||| | | || || ||| | | | | | || | || | ||||| Sbjct 73452 ATAGCCCGTTTGATCCGCTTGTCGCGCCTGT--GAAACAATCCAATCTTTGTATGGAAAT 73395 Query 71862 TGCATTACCAACTGAACCTATGCAGGATATTAATAAGCCTGAA---GGTGAAATTGCATT 71918 |||| | || ||| |||| | | | || ||| | |||| || || |||||| | Sbjct 73394 TGCACTGCCGACTAAACCACTTTATAACATCAATGA---TGAAAACGGAGAGATTGCACT 73338 Query 71919 ATGTACATTAGCTGCATTCAATCTTGGTGCCATTAAAGATTTAGGTCGTATGGAAAAATT 71978 || || ||| | || || ||| | ||||| || | ||| | | | || |||| Sbjct 73337 TTGCACCTTATCCGCCTTTAATTTAGGTGCTATCGACAGTTTGGATGAGTTAGACGAATT 73278 Query 71979 ATCCGAATTAGTTATTAGAGCATTAGATGCTTTACTTGATTACCAAGATTATCCAATACT 72038 | || |||||| | || | ||||||||||| || | ||||| ||||||||||| ||| Sbjct 73277 AGCCCAATTAGCTGTTCGCGCATTAGATGCGCTATTGGATTATCAAGATTATCCGGTACC 73218 Query 72039 AGCTGCTGAAAATGCTAC---CAAGCGAAGACGTACTTTAGGTGTTGGCATTATTAATTA 72095 || || || || | || | | || || ||||| |||| | || ||||| Sbjct 73217 TGCCGCACGTAACTCTTCGCTTAATC---GCCGAACATTAGGCATTGGGGTGATCAATTA 73161 Query 72096 TGCTCATCACTTAGCTAAAAATGGTGTTAAATATTCTGATGGCAGTGCCAACAATTTAAC 72155 |||| || | |||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct 73160 TGCTTATTATTTAGCTAAAAATGGGGTACGTTATTCTGATGGTAGTGCGAATAATTTAAC 73101 Query 72156 TCA-TGAACTCTTCGAAAGTTTTCAGTATTACCTATTGAAAGCAAGTTGTGATTTAGCCA 72214 ||| | ||| |||||| |||| || ||| |||| ||||| | ||| || || | Sbjct 73100 TCACCGCACT-TTCGAAGCCATTCAATACTACTTATTAAAAGCGTCTAATGAATTGGCTA 73042 Query 72215 AAGAACAAGGCGCTTGTCCTGCATTCCATGAGACAACTTATTCACAGGGTATATTACCTA 72274 |||| ||||| || ||||| |||| | | || || | || ||||| ||||||| Sbjct 73041 AAGAGCAAGGGGCATGTCCGTTATTCAAACAAACTCGCTACGCTCAAGGTATTTTACCTA 72982 Query 72275 TTGACCGCTATAATAAGTCAGTAGATGGTATTCATAGTG-AAGAG---TTACATCTTCCG 72330 |||| |||||| || || |||| | | || | ||||| |||| | Sbjct 72981 TTGATAACTATAAAAA---AG-AGATTGATAGCTTAACGAAAGAGCCCCTACACTATGAT 72926 Query 72331 TGGGAGCAATTGAGAGAAGATATTTTGAAATACGGTTTACGTAATTCTACTGTATCCTCA 72390 ||||| ||| | || ||||| |||| || |||||||| ||||| ||||| | Sbjct 72925 TGGGAAACATTACGTCAATCGATTTTACAATATGGCTTACGTAACTCTACCCTATCCGCG 72866 Query 72391 TTGATGCCAAGTGAAACAAGTTCTCAGGTATCTAATGCAACAAATGGTATTGAACCACCT 72450 || |||||| ||||| || ||| | |||||||| || || ||||| ||||| ||| Sbjct 72865 TTAATGCCATCGGAAACTTCCTCACAGATCTCTAATGCCACTAACGGTATCGAACCGCCT 72806 Query 72451 CGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGTATCTTGAAGCAAGTAGTACCTCA- 72509 || |||| || || ||||||| |||||||| ||||| || || ||||| | Sbjct 72805 CGAGGTTATATTAGTGTTAAAGCCTCAAAAGATGGGATCTTACGTCAGGTGGTACCAGAT 72746 Query 72510 TAT----TGGTACAATGGCTAATGACTATGAATTGTTGTGGAATATTCCAAGCAATAATG 72565 ||| | || || ||| | ||||| |||| ||| | || |||| ||| | | Sbjct 72745 TATGAGCAGTTAAAAGGGC-----ATTATGAGCTGTTATGGCAAATGCCAAATAATCAGG 72691 Query 72566 GCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGTCGATCAGGCAATCTCTGCGAACA 72625 | || | ||||||| | || ||||| || ||| | ||||| | || || || || | Sbjct 72690 GTTACTTACAATTAGTCGGTATTATGCAGAAATTTATTGATCAATCGATTTCCGCCAATA 72631 Query 72626 CAAATTATGACCCTACTAAATTCGCAAATGGCAAAGTCCCAGTTAAGCAAATTCTTAAAG 72685 | || || || || |||||||| || |||| ||||||||| | |||||| | | | Sbjct 72630 CCAACTACGATCCGACTAAATTTGCGAATGATAAAGTCCCAATGAAGCAACTATTAGCTG 72571 Query 72686 ATTTAATACGAGGCTATAAGCTTGGTGTTAAAACATTCTATTACCATAACACCCGTGATG 72745 |||| | | ||||||| ||| | ||||| | ||||| ||||| ||||| |||| Sbjct 72570 ATTTGCTCACCGCCTATAAGTACGGTTTAAAAACCCTTTATTATCATAATACCCGCGATG 72511 Query 72746 GTGC 72749 |||| Sbjct 72510 GTGC 72507 Score = 269 bits (298), Expect = 2e-67 Identities = 706/1053 (67%), Gaps = 32/1053 (3%) Strand=Plus/Minus Query 72884 ATGTTCTTAGGTCAACATGTAAACGTATCTCGGTACGACCAACAAAAGCTT-AG-TGCAT 72941 |||||||||||||||| ||| |||||| | || || || || ||||| | || || | Sbjct 72291 ATGTTCTTAGGTCAACCTGTGAACGTAGCACGCTATGATCAGCAAAAATATGAGATG--T 72234 Query 72942 TTGAAAAATTAATAGAAAAACAATTGAGCTTCTTTTGGCGACCTGATGAAATAGATGTAT 73001 |||||||||| || ||||||||| | ||| |||||||| || || || | ||| | Sbjct 72233 TTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGTGGATATTA 72174 Query 73002 CAAAAGACCGTTCTGATTGGCAAAAAATGACTGACTCTGAAAAGCATATTTTCATATCA- 73060 | ||||| ||| ||||| || | | |||| |||||| ||||| || ||||| Sbjct 72173 CTAAAGATCGTATTGATTATCAGCAGCTACCTGAACATGAAAAACATATCTT--TATCAG 72116 Query 73061 -AATCTTAAATACCAAACATTGCTTGATAGCATGGCTGCACGTTCTGTTAATATGGTATT 73119 ||| | ||||| ||||| || | || ||| | |||| | ||| ||| ||| Sbjct 72115 TAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGTCCAAATGTGGCATT 72056 Query 73120 ACTTCCACTTGTATCTTTACCTGAAGTTGAAACATGGATTGAAACATGGGCATTTAGTGA 73179 | | || || | ||| | |||||| | ||||||||| | ||||| ||| ||||| ||| Sbjct 72055 ATTACCTCTAATTTCTATCCCTGAATTAGAAACATGGGTAGAAACTTGGTCATTTTCTGA 71996 Query 73180 AACTATTCACTCTCGCTCATATACTCATATCTTGCGTAACCTTTTCGTAGATCCAAGTGA 73239 |||||||| || ||||| ||||| ||||| | || || || || ||||| | Sbjct 71995 GACTATTCATTCGCGCTCCTATACGCATATTATTCGCAATATTGTCAATGATCCTTCTTT 71936 Query 73240 AGTATTTGATGATATTACAATTAACCCTGAAATATTAAAACGTGCTGAAAG--TATCGCC 73297 | |||||||||||| | ||| | || || ||||||||| || | |||||| Sbjct 71935 GATTTTTGATGATATTGTTAATAATCAGGAGATCCAAAAACGTGC--AACGGATATCGCT 71878 Query 73298 AAATACTTTGATGATGTGA-TACTGACAACTCAGTTCATTCAATCTCAAGGTGAAGGTAC 73356 || | ||||||| | | |||| || ||| | | | || | |||| ||||| Sbjct 71877 CGTTATTATGATGATTTAATTACT-ACCACTAATTACTACCATTTATTAGGTACGGGTAC 71819 Query 73357 TTATCAGGTCAATGGTGAAGAGTATGTAGTCTCAA--AGCGTAAGCTTAAAG-AGCGACT 73413 |||| | |||||| || | || || | || |||| | |||||| | ||| Sbjct 71818 CCATCAAATTAATGGT-AAAACCAT-TACCATTAACTTGCGTGA-ATTAAAGAAAAAACT 71762 Query 73414 TTATCTTGCCGTT---TGTGCTGTCAATGCCTTAGAAGCTATCCGCTTTTACGTAAGTTT 73470 |||||| | ||| || || |||||||| | |||||||| || ||||| || || || Sbjct 71761 TTATCT--CTGTTTAATGAGC-GTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTT 71705 Query 73471 CGCATGTTCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGTAATGCCAAGATTATTAA 73530 || || || ||||| ||||| ||||| || || | ||||| |||||||| |||||||| Sbjct 71704 TGCCTGCTCGTTTGCCTTTGCCGAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAA 71645 Query 73531 ACTAATCGCCCGTGATGAAGCCTTGCACTTAACTGGTACTCAGATGATTCTGAATAACTG 73590 ||| || ||||| |||||||| | ||| | || |||||||| | || | |||| | Sbjct 71644 ACTGATTGCCCGCGATGAAGCTCTTCACCTTACCGGTACTCAATTTATGATTAATACGTT 71585 Query 73591 GCGAACTGGCAAGGATGATCCTGAAATGCAAGAGATTGCAGAAGACCTTAAAGATGTAAG 73650 || | ||| | |||||||| |||||| || || || |||| || | || Sbjct 71584 ACGCAGTGGTGAAGATGATCCAGAAATGGCTGATATCGCTAAAGAGTGCCAACA--ACAG 71527 Query 73651 TCTTAAGATC--TTTATGGATGTTGTTGAAGAAGAAAAGCAATGGGCAAAATATCTATTC 73708 | || |||| ||| | | | | | |||| || | ||||| | || || || Sbjct 71526 TGCTATGATCTGTTTGTCCAAGCAGCAAATCAAGAGAAAGATTGGGCGGATTACCTGTTT 71467 Query 73709 AAAGATGGGTCAATGATCGGTCTTAATGAAGAAATACTTTGCCAGTACGTTGAGTACATT 73768 || || |||||||||||||| ||| ||| || | || || || |||| || ||| Sbjct 71466 TCAGGCGGATCAATGATCGGTCTAAATCGAGATATCTTGTGTCAATATATTGAATATATT 71407 Query 73769 GCTAATCATCGTTTACATAGC-CTAGGCTTTGAAAAACCATTTGATATTAAGTCTAATCC 73827 | ||| ||| | || ||| | ||||| ||| |||| | |||||||| Sbjct 71406 ACCAATATCCGTATGCA-AGCAGTGGGCTTACCCTTACCTTTTGCGACACGCTCTAATCC 71348 Query 73828 TATTCCGTGGATTAGCTCTTATCTAACAAGTGATAATGTGCAAGTTGCACCTCAAGAAAC 73887 |||||| ||||||| || | ||||| || ||||| || || |||||| | Sbjct 71347 TATTCCATGGATTAATAATTGGTTGGTCTCAGATAACGTTCAAGTCGCCCCACAAGAATC 71288 Query 73888 TGAAATTACATCGTACTTAGTTGGTCAAGTTGA 73920 ||||| | || || ||||| |||||| |||| Sbjct 71287 AGAAATCAGCTCTTATTTAGTCGGTCAAATTGA 71255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335647658225503