Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq2372 185 6e-42 >seq2372 Length=84335 Score = 185 bits (204), Expect = 6e-42 Identities = 527/808 (65%), Gaps = 14/808 (2%) Strand=Plus/Minus Query 68459 TCTCTGCCAACGCCAATTATGGCCGGCGTGCGCACCCCTACTCGCCAGTTCTCCAGCTGC 68518 || || || |||||||||||||| || |||||||| || ||||||||||| || Sbjct 74104 TCCCTACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAGTTCGTGT 74045 Query 68519 GTGCTGATTGAAGCTGCTGATAGTCTGAAAGGGATTAGCGCTGCGTCTTCCGCAATCATC 68578 || ||||||| | ||||||||| | |||| || | | ||| || | Sbjct 74044 GTATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAGCGCTATTGTT 73985 Query 68579 GACTACGTGTCACGTCGCGCGGGCATTGGTATTGGCTTTGGGCGTCTGCGTGCGCTGGGC 68638 | ||||| |||| ||||| || ||||| ||| || | ||||| | || Sbjct 73984 AAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGA 73925 Query 68639 AGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTTTTTCCATTCCTGAAACACTTC 68698 ||| ||||||| |||||| || ||| ||||| | ||||||| || ||||| Sbjct 73924 AGTCCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACTTC 73865 Query 68699 CAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGCGGCGGCGCTGCTACAGCGTTC 68758 || || || ||||||||||| ||||| ||||| || ||||| || || || || | || Sbjct 73864 CAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTT 73805 Query 68759 TATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTGCTGAAAAACAACCGTGGCATT 68818 |||||| | ||||| || ||||| |||| | ||||||| || |||||||| ||| Sbjct 73804 TATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTATT 73745 Query 68819 GAAGAGAACCGCGTTCGTCATCTCGACTATGGCGTGATGATCAACCGTCTGATGTATCGC 68878 ||||| || ||||| || ||| | || ||||| || || || | ||||| | Sbjct 73744 GAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACCAG 73685 Query 68879 CGCCTGGTGCGCAACGAAAACATTACGCTGTTCAGCCCACACGATGTGCCGGGCCTGTAC 68938 || | | |||||||| || ||||||| ||||| ||||| || | ||||| Sbjct 73684 CGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGATCTGTAT 73625 Query 68939 GACGCGTTCTTTGTTGATCAGGACAAGTTCGAAGAGCTGTACCTGAAGTACGAAGCCGAC 68998 | || ||||||| ||||| ||| | || ||| || || || | || ||| || Sbjct 73624 GCGGCTTTCTTTGCCGATCAAGACGAATTTGAACGTCTTTATCTTCACTATGAA---CAC 73568 Query 68999 GAGAGCATC---CGTAA----GAAATCTATCCCGGCCGTCGACCTGTTCTCTACGCTGAT 69051 || |||| | || || ||| || | || | || ||||| ||| | || Sbjct 73567 GATAGCAACACACGCAAACGCGAAGTCAA----AGCGATTGAGCTGTTTTCTTTATTAAT 73512 Query 69052 GCAGGAGCGTGCCTCCACTGGTCGTGTTTATATTGCCAACGTCGACCACATGAACGATCA 69111 ||| || || ||||| || || ||| |||||||| || | || || || || Sbjct 73511 GCAAGAACGCGCCTCAACGGGACGTATTTATATTCAAAATATTGATCATTGTAATACCCA 73452 Query 69112 CGGCGCATTCGTTCCGGAAATTGCACCGGTACACCAGTCCAATCTCTGTATGGAGATCAC 69171 || | || | |||| | || || || | || |||||||| |||||||| || | Sbjct 73451 TAGCCCGTTTGATCCGCTTGTCGCGCCTGTGAAACAATCCAATCTTTGTATGGAAATTGC 73392 Query 69172 GCTACCGACCAAGCCACTGGCGTTCACTGACGATCCGAACGGGGAAATCGCGCTTTGCAC 69231 || ||||| || ||||| || | ||| ||||| || || || |||||||| Sbjct 73391 ACTGCCGACTAAACCACTTTATAACATCAATGATGAAAACGGAGAGATTGCACTTTGCAC 73332 Query 69232 CCTGTCTGCGTTCAACCTGGGCGCGATC 69259 | | || || || || | || || ||| Sbjct 73331 CTTATCCGCCTTTAATTTAGGTGCTATC 73304 Score = 147 bits (162), Expect = 1e-30 Identities = 253/364 (70%), Gaps = 5/364 (1%) Strand=Plus/Minus Query 70306 AAGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTAC 70365 ||||| || |||||| | || || |||| |||||||||||||| ||||||||||| || Sbjct 72300 AAGGAGCCAATGTTCTTAGGTCAACCTGTGAACGTAGCACGCTATGATCAGCAAAAATAT 72241 Query 70366 CGTGAC-TTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGT 70424 | || || ||||| |||||||||||||||| || || || ||||| || ||||| || Sbjct 72240 -GAGATGTTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGT 72182 Query 70425 CGACATTACCACTGACCGCATCGACTTCAATACCAAGCTGCAAGAGCACGAGCGCCATAT 70484 || ||||| | || || || || | || |||| | || || || ||||| Sbjct 72181 GGATATTACTAAAGATCGTATTGATT---ATCAGCAGCTACCTGAACATGAAAAACATAT 72125 Query 70485 TTTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTAA 70544 || | || || | || || || | || || ||| |||| || || ||||| || Sbjct 72124 CTTTATCAGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGTCCAAA 72065 Query 70545 CGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGTC 70604 | || | | || || || || || ||||| | || |||||||| || || ||||| Sbjct 72064 TGTGGCATTATTACCTCTAATTTCTATCCCTGAATTAGAAACATGGGTAGAAACTTGGTC 72005 Query 70605 GTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATGA 70664 || || ||||| ||||| ||| ||||||||| ||||| ||| ||| || |||| Sbjct 72004 ATTTTCTGAGACTATTCATTCGCGCTCCTATACGCATATTATTCGCAATATTGTCAATGA 71945 Query 70665 CCCT 70668 ||| Sbjct 71944 TCCT 71941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330409613128740