Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq2372 159 4e-34 seq2331 116 4e-21 >seq2372 Length=84335 Score = 159 bits (176), Expect = 4e-34 Identities = 309/450 (69%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 131903 ATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATG 131962 |||| |||||||||||||| |||| || | || |||| | ||||| ||||||||| Sbjct 74143 ATTAAACGTTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATTATG 74084 Query 131963 GCAGGTGCTCGTACTCCAACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGT 132019 || || | || ||||||||||||||||| ||||| ||||| | ||||| || | Sbjct 74083 GCGGGGGTGCGCACTCCAACTCGCCAGTT---TAGTTCGTGTGTATTGATTGAGTGCGAT 74027 Query 132020 GATTCGTTAAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACG 132078 ||| | | || ||||| || | ||| | ||| || |||| | || |||| Sbjct 74026 GATAGTCTTGACTCAATTAATGCCACCGCGAGCG-CTATTGTTAAATACGTATCACAACG 73968 Query 132079 AGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGG 132138 ||||| || || || || | |||| | | ||||| ||| | |||| | || Sbjct 73967 CGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGG 73908 Query 132139 TGAAG--TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 132196 |||| ||| ||||| ||| ||||||||| | || | |||||||| || || ||| Sbjct 73907 CGAAGCGTTC--CATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAA 73850 Query 132197 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 132256 || ||||||||||| || | || || || || || || | | ||||||| | ||||| Sbjct 73849 TCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCAT 73790 Query 132257 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATT 132316 ||||||||||| ||| |||| || || |||||| || | || ||||| || | Sbjct 73789 TTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTG 73730 Query 132317 CGACATATGGACTACGGAATTCAAATTAAT 132346 || ||| | || || || | ||||||||| Sbjct 73729 CGCCATTTAGATTATGGGGTACAAATTAAT 73700 >seq2331 Length=68774 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 ||||| |||||| | || || || || | ||||||||||| | ||||| || ||||| Sbjct 23807 GGTGGACAACACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAA 23748 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 || || ||||| || ||||| | || || ||||| || |||||||| || || ||||| Sbjct 23747 CACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAAT 23688 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTAC 43888 || | || || ||||| || || |||||||| ||||| || ||||| Sbjct 23687 TCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTACTTTTAC 23641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541139994921520