Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq503 111 1e-19 seq129 104 2e-17 seq739 96.9 3e-15 seq2682 87.8 1e-12 >seq503 Length=216272 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| || || || || | || |||| ||||| || ||||| || || Sbjct 161826 TCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 161767 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||||||| | |||| || || || || |||||| || ||| Sbjct 161766 ATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTT 161707 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| ||||| || |||| || ||||||||||| || | ||||||||| Sbjct 161706 TCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTTTTTACA 161647 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 161646 AAAATTTGCAT 161636 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||||||||| || || || || | ||| |||| ||||| || ||||| || || Sbjct 162747 CTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAA 162688 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||||||||| | |||| || || || || |||||| || ||| Sbjct 162687 GATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATT 162628 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || ||||| |||||||| || | || |||||||| || || | |||||||| Sbjct 162627 TTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTAC 162568 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 162567 AAAAATTTGCAT 162556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||||||||| ||||| | || | || |||| || ||||| ||||| Sbjct 162518 TCCTTCTGAATATTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAA 162459 Query 48636 ATCAGTCGCTGTTGATCCG------TG--GGAACGCCCTCCTTGTCGCTAATCTTTTGTT 48687 |||| || ||||||||||| || |||| || || || || |||||| | Sbjct 162458 ATCAATCTCTGTTGATCCGGCGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCT 162399 Query 48688 TTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAG 48747 | ||| | | || ||||| |||||||| || | || |||||||| || || | | Sbjct 162398 TGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGG 162339 Query 48748 TTTTTACAAAAATCTGCAT 48766 ||||||||||||| ||||| Sbjct 162338 TTTTTACAAAAATTTGCAT 162320 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| || || || || | || |||| ||||| || ||||| || || Sbjct 162054 TCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 161995 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||||||| | |||| || || || || |||||| || ||| Sbjct 161994 ATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTAACATTT 161935 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| ||||| || || | || ||||||||||| || | || || || Sbjct 161934 TCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACG 161875 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 161874 AAAATTTGCAT 161864 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| || || || || | || |||| ||||| || ||||| || || Sbjct 160843 TCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 160784 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||||||| | |||| || || || || |||||| || ||| Sbjct 160783 ATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTT 160724 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| ||||| || || | || ||||||||||| || | || || || Sbjct 160723 TCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACG 160664 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 160663 AAAATTTGCAT 160653 >seq129 Length=1828789 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||||||||| ||||| || ||| | || | || ||||| ||||| || ||||| | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || || || ||||| | |||| || || || || || || ||||||| Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| || || || || | || || ||||| || ||||||||||| |||| Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 48757 AAATCTGCATCGT-GTGTA 48774 | ||||||||| | ||||| Sbjct 1158605 ATATCTGCATCTTGGTGTA 1158587 >seq739 Length=1399493 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || ||||| |||||| |||||| ||||| || ||||| || ||| ||| | || Sbjct 7244 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 7185 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | || || || ||||| |||| ||||| || || | |||| ||||| ||||| Sbjct 7184 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7125 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || || ||| | | | || || || || || |||| ||||| || Sbjct 7124 CTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGGT 7065 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | ||||||||||| |||||||| Sbjct 7064 TTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || ||||| || ||| |||||| || || || ||||| || ||| ||| | || Sbjct 8186 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 8127 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||| || || ||||| |||| ||||| || || | |||| ||||| ||||| Sbjct 8126 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 8067 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || || ||| | | | || || || || || |||| || || || Sbjct 8066 CTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGGT 8007 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | ||||||||||| |||||||| Sbjct 8006 TTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 >seq2682 Length=416 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| || || || || | || |||| ||||| || ||||| || || Sbjct 130 TCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 189 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||||||| | |||| || || || || |||||| || ||| Sbjct 190 ATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTT 249 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| ||||| || || | || ||||||||||| || | || || || Sbjct 250 TCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACG 309 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 310 AAAATTTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380911791358557