Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq2372 197 2e-45 seq2331 168 8e-37 seq1913 120 3e-22 >seq2372 Length=84335 Score = 197 bits (218), Expect = 2e-45 Identities = 326/469 (70%), Gaps = 6/469 (1%) Strand=Plus/Minus Query 40707 TAAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTC 40766 |||| | || |||||||||| ||||||||||| ||||| ||||| || || ||||| Sbjct 74111 TAAAATTTCCCTACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTT-- 74054 Query 40767 CAGTT---GTGTTGTAATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTC 40823 |||| |||| | || || | | |||| ||| | || | || || || Sbjct 74053 -AGTTCGTGTGTATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAG 73995 Query 40824 CGCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCG 40883 ||| || || || || | || ||||| ||||| ||||| | || ||||| | || || Sbjct 73994 CGCTATTGTTAAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCG 73935 Query 40884 CGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTG 40943 || | || ||||| ||||| ||||| | ||||| || ||| || || | Sbjct 73934 TGCCTTAGGAAGTCCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTA 73875 Query 40944 GAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGC 41003 || || | || || || || ||||||||||| || ||||| || || || || || || Sbjct 73874 TAAGTACTTCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGC 73815 Query 41004 AACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAA 41063 ||| | | ||||||| | |||||| | ||||| |||||| | ||||| || ||||| Sbjct 73814 AACGGTATTTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAA 73755 Query 41064 CCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTT 41123 |||||| |||||||||| || | || || | |||||||| ||||| |||| | || Sbjct 73754 CCGTGGTATTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATT 73695 Query 41124 GATGTATAAGCGTTTAATCAATAACGATTACATCACTCTGTTCAGCCCT 41172 ||||| |||||||||| || ||||| | ||| | ||||| |||||| Sbjct 73694 AATGTACCAGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCT 73646 >seq2331 Length=68774 Score = 168 bits (186), Expect = 8e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 50956 TCGCAAAACGTGAAGTTGATATTGAATTTCAACCCACTGTTAAAGTGGAAGGTGGACAAC 51015 ||| | | |||||||| |||||| | ||| ||| ||||||| ||||||||||||| Sbjct 23857 TCGAATATCGTGAAGTACCTATTGATGTCGCACCAACTATTAAAGTAGAAGGTGGACAAC 23798 Query 51016 ACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCTGTGAAGCATCCAGAAA 51075 ||||||| || || || || || || ||||| | ||||| || || || || || |||| Sbjct 23797 ACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAACACCCTGAAA 23738 Query 51076 AATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGTTTCAATTCACTGACTC 51135 | ||||| || ||||| || ||||| || || ||||| |||||||| |||||| | || | Sbjct 23737 ACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAATTCATTAACGC 23678 Query 51136 CTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACA 51173 | |||||||| || |||||||| || || || |||||| Sbjct 23677 CAGAACAACAACGTGACGTTATTGCTCGTACTTTTACA 23640 >seq1913 Length=212763 Score = 120 bits (132), Expect = 3e-22 Identities = 364/544 (67%), Gaps = 14/544 (3%) Strand=Plus/Plus Query 153311 AACGAGAACGCGAACAAAGAC-GCAAGGGTATTCCCTACACAGCGCGATCTGCTGGCTGG 153369 ||||| || || || ||||| | || | |||||| ||| ||||||||| | | || || Sbjct 31795 AACGAAAATGCTAATAAAGATAGTAAAGTTATTCC-TACTCAGCGCGATTTATTAGCAGG 31853 Query 153370 TATCGTAGCGAAACACTTCGC-ACGTAACCACATTCTGCCAAAACACATTGTAGAAGCGC 153428 |||||| || ||||| | || | | || | || | || ||| | ||| |||| Sbjct 31854 TATCGTTGCTAAACATTATGCTAAGCAAT-ATATCTTACCTAAAGAAATTTCTATTGCGC 31912 Query 153429 ATGATTCTGGTGATATCCATTATCATGATCTGGATTA-CAGCCCGTTCACGCCATACACA 153487 ||||| |||||| || |||||||||||||||||||| ||| || | | || Sbjct 31913 ATGATCGTGGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTAT-GTTT 31971 Query 153488 AACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCA 153547 |||||| || | ||||| | || ||||| | || || || || ||||| || || Sbjct 31972 AACTGCATGCTAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCT 32031 Query 153548 GACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCA 153607 || || ||||| || |||||||| ||| || ||| | | |||||||| | || Sbjct 32032 GAAATTGAACCGCCTAAATCAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCC 32091 Query 153608 CAGATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCTAACGTTGATAAAGTGCTGGCT 153667 || | ||| || || || || || ||| || | ||||| |||| |||||| Sbjct 32092 CAAGTAGCCAGCCATATTTATGGTGGCACCACCATTAATCGTATTGATGAAGTTCTGGCT 32151 Query 153668 CCATATGT-TCAAATGACATATGATAAGCA-CTTTAAAGATGCCAAAAAGTATCAAATCC 153725 || ||| || || | ||||| || || | | | | ||| || ||| ||||| | Sbjct 32152 AAATTTGTATCGAA-AAGTTATGAAAAACATCGTCGTATA-GCCGAAGAGTGGCAAATTC 32209 Query 153726 CTCGTGATGTTCAGTATGCAATAGATA-AAACTGAAAAGGA-TGTTTTCGACGCGTTTCA 153783 || | | | || || | || | |||||||| || |||| | || || ||||| Sbjct 32210 CTGATATCGAAAACTACGCTA-AGTCACGTACTGAAAAAGAGTGTTAT-GATGCATTTCA 32267 Query 153784 GTCATATGAATACGAAGTAAACACCCTGCATACTGCGAACGGTCAAACCCCGTTTGTTAC 153843 || | ||||| ||||| || || || ||||||||||| || || ||||| |||||||| Sbjct 32268 ATCGTTAGAATATGAAGTCAATACGCTACATACTGCGAATGGACAGACCCCTTTTGTTAC 32327 Query 153844 AATT 153847 | || Sbjct 32328 ATTT 32331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570049985898920