Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq2372 141 1e-28 seq2331 122 9e-23 seq3883 93.3 5e-14 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 141 bits (156), Expect = 1e-28 Identities = 307/458 (67%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 138522 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCC 138581 ||||| | ||| | ||| || |||||||| | ||| || | || |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 138582 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138641 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 138642 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATG 138701 || || || || || || | || || || || || ||||| || || || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 138702 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 138761 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 138762 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 138821 ||||| ||| |||| | ||||| |||||||||||||||| || | |||| |||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 138822 TGAAGCGGAAGCCTTG---TTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACA 138878 |||| || || || || || | | |||| | |||||| | ||||| Sbjct 73991 ---AGCGCTCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACA 74047 Query 138879 TGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 138938 ||||||||||| ||||| ||||| || || |||||||| || || |||| ||||| Sbjct 74048 CGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAAT 74107 Query 138939 CTGTCGAGTAGATACTGCTTCATAAAAACGGATAACGT 138976 | || || | || ||||||||||| ||| || Sbjct 74108 TTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/196 (72%), Gaps = 9/196 (5%) Strand=Plus/Plus Query 136440 AATAATATATTGGGTGCCTTTAAGGTGAAGCTGTTCATCGCGTGCAATGAACTTCATAAT 136499 ||| ||| |||| || || |||||||||| ||||||||| ||||| | || ||||| Sbjct 71593 AATCATAAATTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAAT 71652 Query 136500 CTTGGCATTACCTTCCATGATTTCCATGTTCTTATGG--AAGTTAAAGGTACATGCAAAA 136557 |||||||| |||||||| | ||| |||| || ||| ||| | || ||||| Sbjct 71653 TTTGGCATTTCCTTCCATTAATTCGC-GTTC----GGCAAAGGCAAACGAGCAGGCAAAG 71707 Query 136558 GATACATAAAAACGAATAGCTTCCAATGCGTTGA-TTACATGCAAACAGAGGTAAAGAGA 136616 |||||||| ||||||||||| | || |||| ||| |||||||| ||||| Sbjct 71708 CTAACATAAAATCGAATAGCTTCAAGCGCATTGACGCTCAT-TAAACAGAGATAAAGTTT 71766 Query 136617 TTTCATTAGCTCACGC 136632 |||| ||| |||||| Sbjct 71767 TTTCTTTAATTCACGC 71782 >seq2331 Length=68774 Score = 122 bits (134), Expect = 9e-23 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 61411 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61470 || || |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 61471 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61530 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 61531 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 61580 || | ||||||||||| | || || || || | |||||| |||||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 >seq3883 Length=158444 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61411 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61470 || || || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116550 GTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTACG 116491 Query 61471 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61530 |||||||| || ||||| || || | || ||||| ||||| |||| | | ||||||| Sbjct 116490 GCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATCT 116431 Query 61531 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 61581 | ||||||||| | |||||||| || ||||| |||||||||||| Sbjct 116430 AATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCA 116380 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/114 (78%), Gaps = 10/114 (9%) Strand=Plus/Minus Query 68786 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTGAATTGGAGCGGATAATGAGAATCGA 68845 |||||||||| | |||||||| | | | | |||||||||| | | ||||||| Sbjct 16666 GCGCTCTACCGA-CTGAGCTATA-----TCA---GCATTGGAGCGGGCAGCGGGAATCGA 16616 Query 68846 ACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGCA 68898 || | ||||||||| ||||||| |||||||||| ||||||||||||| ||||| Sbjct 16615 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535501986719840