Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq916 125 2e-23 seq2372 107 4e-18 seq2551 95.1 3e-14 >seq916 Length=289624 Score = 125 bits (138), Expect = 2e-23 Identities = 310/462 (67%), Gaps = 20/462 (4%) Strand=Plus/Minus Query 150374 CGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATC 150433 |||| ||| ||||| ||| || | ||||||| |||||||| |||||||| ||| Sbjct 260500 CGTAGAACTAAAAACAATCCTGTACTTATTGGTGAGCCAGGTGTCGGTAAAACGGCGATC 260441 Query 150434 GTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATG---AAAGAT 150490 || || || |||| ||||| || | ||| | || || ||||| || || | Sbjct 260440 GTAGAAGGTCTAGCGCAACGTATTGTCAATAGCGAAGTACCAGAAGGACTGCGCAATAAA 260381 Query 150491 GTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAA 150550 || || | || || ||||||| || | | ||||||| |||| |||||||||||| Sbjct 260380 CGTG---TTTTATCATTAGATATGGGGGCGCTGATTGCTGGTGCTAAATATCGTGGTGAA 260324 Query 150551 TTCGAAGAACGTGTAGACAATTTGCTACAAGAA----CTAAA--AGAACGCGATGATGTT 150604 || ||||| ||| || | |||| |||| ||||| |||| | | | ||| Sbjct 260323 TTTGAAGAGCGTTTAAAAGCAGTGCTCAAAGATTTAGCTAAACAAGAAGG-GCGG--GTT 260267 Query 150605 ATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCT 150664 ||| | || || |||||| | || || || | ||||| || || ||| || | Sbjct 260266 ATTTTATTTATTGATGAATTACACACGATGGTTGGTGCAGG---GAAAAGCGATGGGGCA 260210 Query 150665 TTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGG 150723 ||||| | | |||||| ||||||| || || | || |||||| | | ||| | || Sbjct 260209 ATGGATGCGGGTAATATGCTAAAACCCGCCTTAGCCCGTGGTGAATTACACTGTGTT-GG 260151 Query 150724 TGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCG 150783 |||||| || ||||||||||||| || | ||||| |||||| | || || | ||||| Sbjct 260150 TGCAACCACACTCGATGAATATCGTCAATATATTGAGAAAGATCCCGCGCTTGAACGTCG 260091 Query 150784 TTTCATGAAGGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825 ||| ||| || || | | ||||| || | ||||| || Sbjct 260090 TTTTCAGAAAGTCTATGTAGCCGAACCTACGGTCGAAGATAC 260049 >seq2372 Length=84335 Score = 107 bits (118), Expect = 4e-18 Identities = 303/457 (66%), Gaps = 10/457 (2%) Strand=Plus/Minus Query 224563 ATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACACGCAGTTGCTAAA 224622 || || ||||| || || | |||||||| | |||||||| || | | | || | || Sbjct 73918 ATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTT-TATAAGTACTTCCAAAC 73860 Query 224623 A-CTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAACAGTCCACTTCCC 224681 | |||| ||||| ||||||||||| || || || || || || ||||| || | || Sbjct 73859 AGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCC 73800 Query 224682 ATTGTGGCATTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACAAAGGTACAGAAGT 224741 || ||||||| || | ||| | | | || ||| |||||| |||| |||| Sbjct 73799 GTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGA 73740 Query 224742 ATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTTTCTATCAACGCTT 224801 | ||| || || || || |||||| | | |||||||||||| | || || || || Sbjct 73739 AAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACCAGCGTTT 73680 Query 224802 GATT--GAACGTAAAGATATTACTTTCTTCTCTCCAAGTGATGTTCCTGGTTTGTATGAT 224859 ||| |||| ||| || | || | || | || |||||| |||| | |||||| Sbjct 73679 AATTAAAAACGAAAATATCTCGCTGT-TTAGC-CCTTCTGATGTCCCTGATCTGTATGCG 73622 Query 224860 GCATTCTGTGCAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATGAAGCTGATCCA 224919 || |||| ||| || ||||| |||||||| || || | | |||||| ||| Sbjct 73621 GCTTTCTTTGCCGATCAAGACGAATTTGAACGTCTTTATCTTCACTATGAACACGATAGC 73562 Query 224920 AATATTCGTAAGAAAACTATGCC--AGCACTAGAAGTGTTCTCTCAACTAATGAATGAAC 224977 || | || | || | | | | ||| | || |||| ||| | ||||| | |||| Sbjct 73561 AACACACGCA--AACGCGAAGTCAAAGCGATTGAGCTGTTTTCTTTATTAATGCAAGAAC 73504 Query 224978 GTTCTGAAACTGGACGTATCTATATCCAGAATATTGA 225014 | | ||| |||||||| ||||| || |||||||| Sbjct 73503 GCGCCTCAACGGGACGTATTTATATTCAAAATATTGA 73467 Score = 104 bits (114), Expect = 5e-17 Identities = 372/568 (65%), Gaps = 23/568 (4%) Strand=Plus/Minus Query 227041 CCTGATGAGGTAGATTTATCTAAAGACCGAATAGATTTTAAATCACTTACC-GATCACGA 227099 || || ||||| ||| | ||||||| || || |||| | | || |||| || || || Sbjct 72192 CCAGAAGAGGTGGATATTACTAAAGATCGTATTGATTATCAG-CAGCTACCTGAACATGA 72134 Query 227100 GAAGCACATATTTACTTCCAATCTAAAACGGCAAATTTTATTAGATTCTGTTCAAGGTAG 227159 || || || |||| ||| ||||| |||| |||||||| || ||||||| | Sbjct 72133 AAAACATATCTTTATCAGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACG 72074 Query 227160 GGGTCCAAATTTAGTACTGTTGCC----ATATGCATCATTACCAGAACTTGAAAATTTTA 227215 |||||||| | | | | || || || | ||| || ||| | |||| | Sbjct 72073 TAGTCCAAATGTGGCATTATTACCTCTAATTTCTATC----CCTGAATTAGAAACATGGG 72018 Query 227216 TTGAAACATGGTCATTTTTTGAAGGTTCTATACATAGTAAATCATATACACATATTATTC 227275 | ||||| |||||||||| ||| |||| ||| || ||||| |||||||||| Sbjct 72017 TAGAAACTTGGTCATTTTCTGAGA---CTATTCATTCGCGCTCCTATACGCATATTATTC 71961 Query 227276 GAAATATATATCCAA-ACCCAAGTGAAGTTTTTGATACTATGTTGGATATTCCAGAAATT 227334 | ||||| | || | | || | |||||||| ||| | ||| || || || Sbjct 71960 GCAATAT-TGTCAATGATCCTTCTTTGATTTTTGATGATATTGTTAATAATCAGGAGATC 71902 Query 227335 ACATCATGTGCAACTGATATTTCAAAATATTATGATGATTTAGATAACTATGGAACTTAT 227394 | | ||||||| ||||| | ||||||||||||||| || |||| ||| || Sbjct 71901 CAAAAACGTGCAACGGATATCGCTCGTTATTATGATGATTTA-ATTACTACC--ACTAAT 71845 Query 227395 TA-TA--AGTTATTGGGTGAAGGCACTCACACCGTTAATGGTGAAAAAATTGTTGTTGAT 227451 || || | ||||| ||| || || || |||||||| ||| ||| || | Sbjct 71844 TACTACCATTTATTAGGTACGGGTACCCATCAAATTAATGGTAAAACCATTACCATTAAC 71785 Query 227452 ATGTATGAGCTAAAGAAAAAACTATGGCTATGTATTAACAGTATTAATATTCTAGAAGGT 227511 || ||| ||||||||||||| | || ||| | | || | ||| || |||| | Sbjct 71784 TTGCGTGAATTAAAGAAAAAACTTTATCTCTGTTTAATGAGCGTCAATGCGCTTGAAGCT 71725 Query 227512 ATTCGTTTTTATGTTTCATTTGCGTGTTCCTGGGCATACGCCGAGAAC-AATCAACTTGA 227570 ||||| ||||||||| ||||| || || | || | ||||| | ||| || | || Sbjct 71724 ATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCCGAACGCGAATTAA-TGGA 71666 Query 227571 GGGGAATGCTAAAATAATTAGATTGATT 227598 || ||||| ||||| |||| | ||||| Sbjct 71665 AGGAAATGCCAAAATTATTAAACTGATT 71638 >seq2551 Length=15985 Score = 95.1 bits (104), Expect = 3e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 324510 TATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTT 324569 ||||||||||||||||||||||||||||||| ||| | ||| | | |||||| ||||| Sbjct 14019 TATATGGGGCTATAGCTCAGTTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCACCGGTT 14078 Query 324570 CGAACCCGTTTAGCTCCACAAA 324591 ||| |||| |||||||||| || Sbjct 14079 CGATCCCGGTTAGCTCCACCAA 14100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147508663232382