Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq2372 86.0 1e-11 seq833 84.2 4e-11 >seq2372 Length=84335 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || |||||||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 40146 GACGCGGGGTGGAGCAGCTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCA 40205 Query 133020 AATCCCTCCCCCGCATCCAC 133039 ||||| |||||||| |||| Sbjct 40206 AATCCAGCCCCCGCAACCAC 40225 >seq833 Length=155781 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || |||||||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 88128 GACGCGGGGTGGAGCAGCTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTCA 88069 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| |||||||| ||| Sbjct 88068 AATCCAGCCCCCGCAACCA 88050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895704155432280