Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019452.1 Length=156628 Score E Sequences producing significant alignments: (Bits) Value seq2372 102 8e-17 >seq2372 Length=84335 Score = 102 bits (112), Expect = 8e-17 Identities = 268/406 (66%), Gaps = 10/406 (2%) Strand=Plus/Plus Query 52937 TTAATCTGAATCCCATAGTCGATACGGCGTTCACGGTTCTCTTCCAATCCACGGTTGTTT 52996 ||||| || | |||||| || | | |||| | || || ||||| | |||||||| || Sbjct 73701 TTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTG 73760 Query 52997 TTGAGAACAACGACATCATCAAATTGATAATGCCAGATGGGA--ACATAGCATGTTGCCG 53054 || || | | | || | || ||||||| | ||| | ||| | ||||||| Sbjct 73761 CGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACC--GTTGCCG 73818 Query 53055 ATCCACCACGGATACCGCCTTGAGAGCAAGACTTCAGGGCACCAGTC---AAATACTTGA 53111 || || || | ||||||||||| || || |||| || | || || ||||| Sbjct 73819 CCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCA---CAGCTGTTTGGAAGTACTTAT 73875 Query 53112 TGAATGGAACCAGACCTGTATGGACCATTTCCCCTTTACGGATAGGGCTACCGATGCCAC 53171 ||||||| ||| ||||||| | ||| || ||||| || || || | | ||| Sbjct 73876 AAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCAC 73935 Query 53172 GAATTGCCCCAACATCGAATCCAATGCCAGCACGTTTGGAAACATAATCCACGATGCTTT 53231 | || || ||| | ||||| ||||| |||| || || || | || || Sbjct 73936 GGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAGCGC 73995 Query 53232 TCGCAGTGGCATTAATTGAGTCCAATGTATCACCAGTTTTGATCAATACACAAGAGCTGA 53291 |||| ||||||||||||||||| | ||||| | | ||||||||||| || || | Sbjct 73996 TCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAA 74055 Query 53292 ACTGTCGGGTCGGGGTGCGGACGCCGGACATAATAGGTGTTGGAAG 53337 |||| || || || ||||| || || | |||||| || || || || Sbjct 74056 ACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAG 74101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501046781092320