Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq3883 129 1e-25 seq1913 105 1e-18 >seq3883 Length=158444 Score = 129 bits (142), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 1429 TTAAATAAGGGGTTTTTAGTAACAGCATCTTCAAGATGTTCTGGTGCGAAATGGGCATAG 1488 |||| || |||||| || | || ||||| | || || ||||| || || ||||| Sbjct 35071 TTAATTAGTGGGTTTAATATAGCCGCTTCTTCCAAGTGATCGGGTGCAAAGTGAGCATAA 35012 Query 1489 ACCATTGTCATTTTTATATCTGAGTGCCCTAAAATATCTCTCAATACAAGAATATTTCCG 1548 |||||||| ||| ||||| | |||||||| || | | | ||| || ||||| ||| Sbjct 35011 CGCATTGTCACTTTAATATCAGTATGCCCTAATATTTTTTGTAGTACCAGTATATTGCCG 34952 Query 1549 CCATTCATCATAAAGTGACTAGCGAATGTATGGCGCAATACATGCGTGCACTGGCCCTCT 1608 || ||||||||||| || || |||||||| ||||| | ||| ||||| | ||||| ||| Sbjct 34951 CCGTTCATCATAAAATGGCTGGCGAATGTGTGGCGTAGTACGTGCGTTAATTGGCCGTCT 34892 Query 1609 GGCAAGTCAATACCTGCTCTTTT 1631 || || |||||||| || ||||| Sbjct 34891 GGTAATTCAATACC-GCACTTTT 34870 >seq1913 Length=212763 Score = 105 bits (116), Expect = 1e-18 Identities = 265/396 (67%), Gaps = 20/396 (5%) Strand=Plus/Minus Query 1450 ACAGCATCTTCAAGATGTTCTGGTGCGAAATGGGCATAGACCATTGTCATTTTTATATCT 1509 || |||||||||| || || || || || || ||||| ||| |||||||| |||||| Sbjct 83275 ACCGCATCTTCAAAGTGATCAGGCGCAAAGTGTGCATATCGCATGGTCATTTTGATATCT 83216 Query 1510 GAGTGCCCTAAAATATCTCTCAATACAAGAATATTTCCGCCATTCATCATAAAGTGACTA 1569 | ||| || | || | | || || | ||| || || |||||||||||||| || || Sbjct 83215 GTGTGGCCGAGTATTTTTTGTAAAACTAAAATGTTACCACCATTCATCATAAAATGGCTG 83156 Query 1570 GCGAATGTATGGCGCAATACATGCGTGCACTGGCCCTCTGGCAAGTCAATACCTGCTCTT 1629 ||||| |||||||| ||||| || || | || | || || | || || |||| | Sbjct 83155 GCGAAGGTATGGCGTAATACGTGGGTTAATTGTCGTTCGGGTAGTTCTATTGCTGCACGA 83096 Query 1630 T---TTACTGCACGCTCAAAAGATTTTCTGCATGGCGTGAATAACTTCCCTCTGTTTTTG 1686 | || ||| || || | | ||||| || |||| || || | |||||| Sbjct 83095 TCGATTGCTGAGCG---GAACGCTGAATAACATGGTGTAAATAGGTTACCATTCTTTTTG 83039 Query 1687 GGGAGTTCGTGATACAGATCTTG-AGAT-ATTGGTACTGTTCTGTTTTTCTTGCCCTTTG 1744 || | ||||| || ||| ||| | | ||||| | |||| || || || |||| Sbjct 83038 GGAATTTCGT--TAAAGAGTTTGTCGCTAATTGGAATGGTTCGATTGCGTTTACCTTTTG 82981 Query 1745 TCTTTGTATAAGTAATTCGGTATTTCGATATT----TGGTG-GCCCTGAAGGTTTTCGGC 1799 | || |||| || ||| || | || || | ||| ||| | ||| ||||||| Sbjct 82980 TGTTGATATAGGTGATT-----TTCCCATCTTTAACTTGTGTGCCTTTTAGGCTTTCGGC 82926 Query 1800 TTCACTCCACCGTGCGCCGGTAGCTAAGCATATTTT 1835 ||| ||||||| ||| || || ||||| || ||||| Sbjct 82925 TTCGCTCCACCTTGCTCCTGTTGCTAAACAGATTTT 82890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109045601083882