Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq2372 145 8e-30 seq2331 132 5e-26 seq3883 100 3e-16 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 145 bits (160), Expect = 8e-30 Identities = 313/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 138485 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACC 138544 ||||| | ||| | ||| || |||||||| | ||| || | || |||||||| | ||| Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 138545 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138604 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 138605 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 138664 || || || || || || | || || || ||||| ||||| ||||| || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 138665 TTTCCAAAAAGGAATAACACCAGTATG--ACGTACTTCACCTGTACCAATCTTAGAACCT 138722 || |||| |||||| ||||||||| ||| |||| || | ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCCT 73928 Query 138723 TCGGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACA 138782 |||||| ||| |||| | ||||| |||||||||||||||| || | |||| |||| Sbjct 73929 AAGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACA 73988 Query 138783 ATTG---AAGCAGAAGCCTT-ATTGA---TAGACTTTAATGAATCACCTGCTTCAATAAC 138835 || | || | || || ||||| ||||| |||| | ||||| | Sbjct 73989 ATAGCGCTCGCGGTGGCATTAATTGAGTCAAGACT-------ATCATCGCACTCAATCAA 74041 Query 138836 AACGCATGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAG 138895 || || ||||||||||| ||||||||||| || || |||||||| || || || || Sbjct 74042 TACACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAG 74101 Query 138896 TGAAATCTGTCGAGTAGATACTGCTTCATAAAAACGGATAACGT 138939 ||||| | || || | || ||||||||||| ||| || Sbjct 74102 GGAAATTTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 >seq2331 Length=68774 Score = 132 bits (146), Expect = 5e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 60084 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60143 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 60144 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60203 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 60204 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAATTTTAA 60261 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq3883 Length=158444 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60083 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 60142 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 60143 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 60202 |||||||| || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 60203 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 60255 | | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 69634 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 69692 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 69693 CATTATACGATATCCGCA 69710 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532631786176760