Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019505.1 Length=166452 Score E Sequences producing significant alignments: (Bits) Value seq2372 147 2e-30 seq1913 138 1e-27 seq2331 132 5e-26 seq3883 100 3e-16 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 147 bits (162), Expect = 2e-30 Identities = 313/463 (68%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 138618 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138677 ||| || | ||| | ||| || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 138678 TTTGTTATTTTTCAAAAC-AAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAG 138736 |||||| | || || ||| ||||| ||||| |||||||| | |||||| | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAG-TTTTCTACTTCTAAATGCCATAACGGATAAAATA 73809 Query 138737 CAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAAT 138796 | || || || || || || | || || || || || ||||| ||||| || || || | Sbjct 73810 CCGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGT 73869 Query 138797 GTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTT 138856 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73870 ACTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTA 73929 Query 138857 CAGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAA 138916 ||||| ||| |||| | ||||| |||||||||||||||| || | |||| ||||| Sbjct 73930 AGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAA 73989 Query 138917 TTGAA---GCGGAAGCCTTA-TTGAT---AGACTTTAATGAATCACCTGCCTCAATAACA 138969 | | |||| || ||| |||| ||||| |||| | |||||| | Sbjct 73990 TAGCGCTCGCGGTGGCATTAATTGAGTCAAGACT-------ATCATCGCACTCAATCAAT 74042 Query 138970 ACGCATGAACTAAACTGCCGGGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAAT 139029 || || ||||||||||| || |||||||| || || |||||||| || || || | Sbjct 74043 ACACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGG 74102 Query 139030 GAAATCTGTCGAGTAGATACTGCTTCATAAAAACGGATAACGT 139072 ||||| | || || | || ||||||||||| ||| || Sbjct 74103 GAAATTTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 >seq1913 Length=212763 Score = 138 bits (152), Expect = 1e-27 Identities = 394/594 (66%), Gaps = 15/594 (3%) Strand=Plus/Minus Query 42154 ACCAAATGTAATTGTTACAAAAGGCGTTTGTCCGTTTGAACTAAAGAGAGTATTTACTTC 42213 ||||||| || ||| |||||||| || ||||| || | | || || ||||| ||||| Sbjct 32340 ACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTATGTAGCGTATTGACTTC 32281 Query 42214 ATATTCATAAGCTTGGAATGCATCGTATACA-TCTTTTTCTGTTTTAGATTGAGCATAAT 42272 |||||| | | ||| |||||||| || ||| |||||||| || || | ||| || | Sbjct 32280 ATATTCTAACGATTGAAATGCATCATA-ACACTCTTTTTCAGTACGTGACTTAGCGTAGT 32222 Query 42273 TTAACGCATCAGCGATTTGCCATTTTTCTGC-ATCCTCAATATGTTTTGCATA--GGTGC 42329 || ||||| |||||||| | ||| || || | | ||||||| |||| | | Sbjct 32221 TTTCGATATCAGGAATTTGCCACTCTTCGGCTATAC-GACGATGTTTTTCATAACTTTTC 32163 Query 42330 GTTTAACATAAGGAGAAAGTACTTTATCTACATTAGCAAAAGTCGTTCCGCCATATTGAT 42389 | | ||| | || || |||| ||| | | | || || || || ||||| || Sbjct 32162 GAT--ACAAATTTAGCCAGAACTTCATCAATACGATTAATGGTGGTGCCACCATAAATAT 32105 Query 42390 GGGAAGCAACTTGCGCAGTAATTTGTGCCATAATTGCAGTAGCAACGCCAATTGATTTAG 42449 || || ||||| || |||| ||||| | | || || ||| ||||||||||| Sbjct 32104 GGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGGCAGTTGAAATTGATTTAG 32045 Query 42450 GAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTTCTCAAGCATTCCTTTTAAATCTA 42509 | | |||||| | ||||| || | ||||| || || |||||||| | |||||| | Sbjct 32044 GCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTTGGTTAGCATTCCATCTAAATCAA 31985 Query 42510 CTAAACAGCAATT-AGTAAATGGAAGAGCAGGG-GAATAATCAATATCATGGAAATGAAT 42567 || ||| || | | | |||| | |||| | |||||| | |||||| ||||||| Sbjct 31984 TTAGCATGCAGTTAAACATAGGGAAAA--AGGGAGCATAATCCAGATCATGATAATGAAT 31927 Query 42568 AATTCCGCTTTCATGCGCTTTCATAATAAAAGACGGGACCATATTT---TTGGCAATGTG 42624 || | |||||||| | ||| || | |||| | || ||| || Sbjct 31926 TTCACCACGATCATGCGCAATAGAAATTTCTTTAGGTAAGATATATTGCTTAGCATAATG 31867 Query 42625 TTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTTATT 42684 ||||| || ||||| || | | || || ||||| |||| ||| | ||||||||| Sbjct 31866 TTTAGCAACGATACCTGCTAATAAATCGCGCTGAGTAGGAATAACTTTACTATCTTTATT 31807 Query 42685 AGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCCTTCAATTTC 42738 |||||| ||||| |||| | ||||| ||| | ||| || |||| ||| || Sbjct 31806 AGCATTTTCGTTCAAAATTGCCATATTACTTTGTTCAATTAACCCTTTAATCTC 31753 >seq2331 Length=68774 Score = 132 bits (146), Expect = 5e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 61101 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61160 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 61161 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61220 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 61221 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAATTTTAACT 61280 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAATA 23820 Query 61281 GTAGGT 61286 || ||| Sbjct 23821 GTTGGT 23826 >seq3883 Length=158444 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 61100 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 61159 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 61160 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 61219 |||||||| || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 61220 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 61272 | | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 69974 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 70032 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 70033 CATTATACGATATCCGCA 70050 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532481396627680