Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq2372 145 2e-29 seq2331 131 4e-25 seq3883 123 6e-23 seq3995 91.5 3e-13 >seq2372 Length=84335 Score = 145 bits (160), Expect = 2e-29 Identities = 323/468 (69%), Gaps = 24/468 (5%) Strand=Plus/Minus Query 128666 ATTCGTGATGGCGATGCAGTACATACTGGT-GTAGTACCATTCTTATCTGCATTAGCAAA 128724 || || | |||||| || | ||||||||| ||| | ||||| |||| | | | |||| Sbjct 73918 ATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATT-CCATT-TTATAAGTACTTCCAAA 73861 Query 128725 AA-CTGTCAAAAGCTGTTCCCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTC 128783 | |||| ||| |||||| || || || ||| | || ||||| ||||| ||| || || Sbjct 73860 CAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATC 73801 Query 128784 CAATGTGGCATTTGGAATTTGAAAA--TATTGTAGTACTGAAAAATAATAAAGGAACTGA 128841 | | |||||||| ||| | ||||| ||||| || || ||||| || | ||| Sbjct 73800 CGTTATGGCATTTAGAAGTAGAAAACTTATTG--GTGCTACGCAATAACCGTGGTATTGA 73743 Query 128842 ATTTAACCGAGTAAGACAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACG 128901 | || || || | || | || ||| | | ||||| ||||| | | || || || Sbjct 73742 AGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACCAGCG 73683 Query 128902 ATTGATTGATGGAAAAGACATTACAT---TCTTTAGCCCACATGATGTTCCTGATCTATA 128958 || ||| | ||| || | || | | |||||||| |||||| |||||||| || Sbjct 73682 TTTAATTAA---AAACGAAAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGATCTGTA 73626 Query 128959 TGATGCATTTTGTGCTGATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAACTCGA 129018 || || || | ||| |||||||| |||||||||||||| ||| || | ||||||| ||| Sbjct 73625 TGCGGCTTTCTTTGCCGATCAAGACGAATTTGAACGTCTTTATCTTCACTATGAACACGA 73566 Query 129019 T-GAAACTATTCGTAGGAAAACTATGCC--AGCGATTGAAGC--ATTTAGTCATCTAATA 129073 | | ||| | || | || | | | | |||||||| ||| ||| | || |||| Sbjct 73565 TAGCAAC-ACACGCA--AACGCGAAGTCAAAGCGATTG-AGCTGTTTTCTTTAT-TAATG 73511 Query 129074 CAAGAGCGTGCAGAAACTGGCCGCATTTATATTCAGAATATTGATAAT 129121 ||||| || || ||| || || ||||||||||| ||||||||| || Sbjct 73510 CAAGAACGCGCCTCAACGGGACGTATTTATATTCAAAATATTGATCAT 73463 >seq2331 Length=68774 Score = 131 bits (144), Expect = 4e-25 Identities = 140/184 (76%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 321583 AAAATTGAAGGTGGTCAACATTTAAATGTAAATGTATTATCACGTTCTCAA---TTAGAA 321639 ||| | |||||||| ||||| |||||||| ||||||||| ||| | || |||||| Sbjct 23816 AAAGTAGAAGGTGGACAACACTTAAATGTGAATGTATTA---CGTCGTGAAACGTTAGAA 23760 Query 321640 GAAGCACAGAAATTTCCTGAAAAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCA 321699 || || ||| |||||||| || || ||| | ||||||||||||||||| ||||| Sbjct 23759 GACGCGGTTAAACACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCG 23700 Query 321700 GTTCGTTTTAATTCTCTTACGAAAGAACAACAAAATGATGTAATTTCACGAACTTTCACT 321759 || ||||||||||| | ||| |||||||||| ||| || ||| | || ||||| || Sbjct 23699 GTGCGTTTTAATTCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTACTTTTACA 23640 Query 321760 ACTA 321763 |||| Sbjct 23639 ACTA 23636 >seq3883 Length=158444 Score = 123 bits (136), Expect = 6e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 321587 TTGAAGGTGGTCAACATTTAAATGTAAATGTATTATCACGTTCTCAATTAGAAGAAGCAC 321646 ||||||||||||| || | ||||| || |||||| ||| |||| ||| ||| Sbjct 116379 TTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCAA 116438 Query 321647 AGAAATTTCCTGAAAAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCAGTTCGTT 321706 | || ||||||||| ||||| ||| | ||||||||||||||||| ||||| || |||| Sbjct 116439 TGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGTT 116498 Query 321707 TTAATTCTCTTACGAAAGAACAACAAAATGATGTAATTTCACGAACTTTCACT 321759 |||| ||| | || ||||| |||||||| || || ||| | || || || ||| Sbjct 116499 TTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTACT 116551 Score = 98.7 bits (108), Expect = 2e-15 Identities = 227/332 (68%), Gaps = 15/332 (5%) Strand=Plus/Plus Query 15275 GGGTATAAACAAGTTGGTGTTGATTTCCCTGTGTATCTTAGTCC-AAAAGGTAAT--GAA 15331 || ||| |||| |||||| |||||| ||||| | |||| ||| |||| | || ||| Sbjct 131977 GGCTATCAACAGGTTGGTCATGATTTTCCTGTTTTTCTTCATCCTAAAACGAAACAAGAA 132036 Query 15332 TTTGCATTAGCTCGTGTAGAAAGAAAAACAGGGAATGGTTATGGTGGTTTTACCGTTGAA 15391 | |||| ||||||| ||| | ||| |||| || |||||| ||| |||| ||| Sbjct 132037 TATGCACTAGCTCGGACTGAACGTAAATCAGGCAAAGGTTATACTGGATTTATTTGTGAT 132096 Query 15392 ACAAAAGGTGTCACT---CTTGAAGAAGAC-TTATCTCGTCGAGATTTGACAATTAATAG 15447 || || || | |||||| | ||| |||| ||| || ||| |||| |||||| Sbjct 132097 TTTAACCCTGACATTACGCTTGAACAGGACCTTAT-TCGGCGTGATCTGACCATTAATGC 132155 Query 15448 TATTGCATATGAACCACTAATGGGAATCCACATTGACCCATTTAAAGGAAGAGATGATAT 15507 ||||| | | ||| | | |||| | |||| |||||||| || | | |||| | Sbjct 132156 CATTGCCCAAGCGCCA-TCGGGAGAATTTA--TTGATCCATTTAATGGTATCGGTGATCT 132212 Query 15508 TAAAAATAAAATCTTGCGTCATACAAGTTCA--GCTTTTAGTGAAGATCCACTCCGTGTT 15565 ||| | ||| | || | |||| | || |||||| ||||||||||||| || || Sbjct 132213 TAATCAAAAATTATTAAGACATATT--TCCATCGCTTTTCGTGAAGATCCACTGCGAGTA 132270 Query 15566 CTAAGGCTTGCTCGTTTTGCTACACGTTTTCA 15597 || | | ||||||||||| |||||| ||| Sbjct 132271 TTACGTGTAGCTCGTTTTGCAGCACGTTATCA 132302 >seq3995 Length=10512 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 178300 TACGTCCCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTC 178359 || ||| |||||| |||| |||||||| |||| ||||||||||| ||||||||| ||||| Sbjct 9033 TATGTCTCCTTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTC 8974 Query 178360 GAGTCCAGTAGGGGA 178374 || ||| |||||||| Sbjct 8973 GAATCCTGTAGGGGA 8959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106378792903208