Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq1913 127 1e-24 >seq1913 Length=212763 Score = 127 bits (140), Expect = 1e-24 Identities = 319/477 (67%), Gaps = 11/477 (2%) Strand=Plus/Plus Query 27650 ACTGAAAAAGACGTATTC-GATGCTTGTCAGACTCTAGAATACCAAGTAAATAC--TATT 27706 ||||||||||| || || ||||| | ||| | ||||||| |||| ||||| || Sbjct 32239 ACTGAAAAAGA-GTGTTATGATGCATTTCAATCGTTAGAATATGAAGTCAATACGCTACA 32297 Query 27707 TACTCAACTAATGGTCAGACTCCGTTCTTGACATTTGGATTCGGTCTAGGTACTTCTTGG 27766 |||| | ||||| ||||| || || | ||||||||||| ||| |||| || |||| Sbjct 32298 TACTG--CGAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGG 32355 Query 27767 GAAGCTAAACTAGTTCAGAAAGGTATTCTACAGAATCGTATTGCTGGTCTAGGTAAAGAA 27826 ||| | || |||| || || ||| ||||||| |||| |||| ||| | Sbjct 32356 GAATCACGCTTAATTCAAGAATCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAAT 32415 Query 27827 GGTACTACTCCGGTATTCCCTAAGCTAGTATTTGGTCTCAAAGATGGGGTAAACCTGAAG 27886 || || | || || ||||| |||| |||| ||||||||||||| || | ||| Sbjct 32416 CATAAAACGGCAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGATGGGGTTAATCATAAG 32475 Query 27887 CCAGAAGACCCTAACTACGATATTAAGCAGCTTGCATTAGAATGTGCTACTGTTCGCATG 27946 ||| ||| | || || ||||| || | |||||||| ||||| || || ||| Sbjct 32476 CCAACAGATCAAAATTATACGATTAAACAATTAGCATTAGAGTGTGCCGCTAAACGAATG 32535 Query 27947 TATCCAGACATACTTAACTACGATAAGACTGTTGAA-ATTACAGGCGGATATAAAGCACC 28005 ||||| || || ||||| || ||| | | || | || | ||||| || |||| | || Sbjct 32536 TATCCTGATATCCTTAATTATGATCA-AGTGGTCAAGGTAACAGGATCATTTAAAACCCC 32594 Query 28006 TATGGGCTGTCGCTCATTCTTGTCTACTTGGTATGATGAAGACGGTAAAGAAACATATGC 28065 ||||||||||| ||||| | | ||||| ||||| || | ||| ||| Sbjct 32595 AATGGGCTGTCGTAGTTTCTTAGGTGTT---TATGAAGAAGATGGGCAGCAAATTCATGA 32651 Query 28066 AGGTCGTAATAACCTTGGTGTGGTTTCTCTGAACATTCCTAAGATTGCGCTAGAAGC 28122 || |||||||| | || || || | | || |||||| ||||| | ||||| Sbjct 32652 TGGGCGTAATAATTTAGGGGTAATTAGTTTAAATATTCCTCGTATTGCCATTGAAGC 32708 Score = 107 bits (118), Expect = 1e-18 Identities = 207/303 (68%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 28682 ATCTGCTACGGGGAATTCCCTAATATGCGCCACAATATTGAAGCACTCGAAAATGTGTGG 28741 ||||| || || |||| ||||||||||| || ||| || |||| | ||| |||| ||| Sbjct 33268 ATCTGTTATGGTGAATACCCTAATATGCAGCATAATCTTAAAGCGTTAGAAGATGTATGG 33327 Query 28742 GATTACGCCTACACCAAAGTCCCATACTACGGCACCAACACACCAATTGATGAATGCTAT 28801 ||||| ||| | | || || || || || || || || || |||||||| || ||| Sbjct 33328 GATTATAGCTATAGCCGCGTTCCTTATTATGGGACGAATACCCCTATTGATGAGTGTTAT 33387 Query 28802 AGCTGCGGATTCAAAGGTGAGTTCAATTGTACAAGCAAAGGTTTTGAGTGTCCTAACTGC 28861 || || | | ||||| || |||||| || ||||| || ||||| | || Sbjct 33388 GAATGTGGTTATAGTGGTGAATTTTCTTGTACTAGTAAAGGGTTCACTTGTCCAAGTTGT 33447 Query 28862 GGAAACCACGA-CCCAGAGAAATGCTCTGTCACCAGACGAGTGTGTGGCTACCTAGGTAA 28920 || || ||||| |||| || || || || || | || || |||||||| | || | Sbjct 33448 GGTAATCACGATTCCAGTAAAGTG-TCGGTTACTCGTCGTGTATGTGGCTATTTGGGGAG 33506 Query 28921 TCCTGGTACTCGTCCATTCAATGCAGGTAAACAGTCAGAAATGACTAAACGTGTAAAACA 28980 || | | || | ||||| ||||| ||||||||| |||| | | ||||| ||||| Sbjct 33507 CCCCGATGCTAGACCATTTAATGCGGGTAAACAGGAAGAAGTAAAACGTCGTGTTAAACA 33566 Query 28981 TCT 28983 || Sbjct 33567 CCT 33569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356670233842933