Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq916 123 4e-23 seq1913 114 2e-20 seq2372 113 7e-20 seq1348 86.0 9e-12 seq911 86.0 9e-12 >seq916 Length=289624 Score = 123 bits (136), Expect = 4e-23 Identities = 77/83 (93%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| || Sbjct 161622 GGCCCCTTAGCTCAGTTGGTCAGAGCAGTCGACTCATAATCGATTGGTCACTGGTTCAAG 161563 Query 198995 TCCAGTAGGGGCCACCAGATAAA 199017 ||||||||||||||||| |||| Sbjct 161562 TCCAGTAGGGGCCACCACTTAAA 161540 >seq1913 Length=212763 Score = 114 bits (126), Expect = 2e-20 Identities = 244/356 (69%), Gaps = 9/356 (3%) Strand=Plus/Minus Query 115650 TCACCAAGATATCCACAAACTCTACGCTTAACATCCAATTTACTACCGTCATGGTTCCCA 115709 || |||| ||| ||||| || | ||| |||| || |||||| || || || ||| Sbjct 33505 TCCCCAA-ATAGCCACATACACGACGAGTAACCGACACTTTACTGGAATCGTGATTACCA 33447 Query 115710 CATGATGGACATTCATAACCCTTGGAT-GTAGGAACCATTTCCCCATGATAACCACAATC 115768 || |||||| ||||||| | ||| | | ||| ||| ||||||||| || Sbjct 33446 CAACTTGGACAAGTG-AACCCTTTACTAGTACAAGAAAATTCACCACTATAACCACATTC 33388 Query 115769 AAAACACTGGTCGATTGGGGTATTTGTCCCATAATAAGGGGTATTTTGATACGCAAAATC 115828 | |||||| || || |||||||| |||||||||||||| ||| | |||| Sbjct 33387 ATAACACTCATCAATAGGGGTATTCGTCCCATAATAAGGAACGCGGCTATAGCTATAATC 33328 Query 115829 CCAAACATCTTCGAGTGCCTTTAAG-TTATTTTTCATATTTGGAAATTCGCCATATGAAA 115887 ||| |||||||| | | ||||||| |||| | |||||| || |||| ||||| | | Sbjct 33327 CCATACATCTTCTAACG-CTTTAAGATTATGCTGCATATTAGGGTATTCACCATAACAGA 33269 Query 115888 TAAAACCACC--TTTCGAATATGTAATGAAATCTCGTTCAAACAGGATCTTGTGGTATGG 115945 | || ||||| || ||| || || | || ||||||| | || || || || Sbjct 33268 TGAAGCCACCATTTGCGATCATAGGAT--AGGCTTTTTCAAACTCTAATTTTTGATAAGG 33211 Query 115946 GTCTGTTTTATACTCAACGTCAAGATGGAAACTATTCGTGTAATATCCTTTTTCAT 116001 ||| ||| | ||| || || ||||||||||||||||| || || ||||| |||| Sbjct 33210 GTCAACTTTTTTCTCCACATCCAGATGGAAACTATTCGTATAGTAACCTTTATCAT 33155 >seq2372 Length=84335 Score = 113 bits (124), Expect = 7e-20 Identities = 246/365 (67%), Gaps = 5/365 (1%) Strand=Plus/Plus Query 119958 aGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGTAGCAGAGCCGCCACGTAGA 120017 ||||| || || || |||||||| | || ||| | || || | || || |||| Sbjct 73774 AGTTT-TCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACC 73832 Query 120018 GCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTTGTAGAATGGGATTACGCCG 120077 | ||||| |||||| || || || || ||||||| ||| || ||||| || || Sbjct 73833 CCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATACAACCA 73892 Query 120078 GTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGCACGAATAGCACCAGCATTA 120137 |||||| |||||||| ||| || || || ||||| || ||| |||||| Sbjct 73893 GTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACCGGCATTA 73952 Query 120138 ATACCAATACCAGCACGTTGACTGATA--TAACTAATAATAGATGCAGACGTATCGTTAA 120195 || ||||| ||||| ||||| ||||| || ||| ||||| | || | |||| Sbjct 73953 ATGCCAATTCCAGCGCGTTG--TGATACGTATTTAACAATAGCGCTCGCGGTGGCATTAA 74010 Query 120196 TAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACGAACTAAATTGGCGCGTTGGGG 120255 | || | ||| ||| || | ||||| |||||||||||||| ||||| ||||| | Sbjct 74011 TTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGGAG 74070 Query 120256 TGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCTTAAATAGAGAAGCCGCATTAT 120315 |||| | || ||| ||| || || || | ||||| ||||| ||| ||||| || Sbjct 74071 TGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGCATCAT 74130 Query 120316 AATAA 120320 || || Sbjct 74131 AAAAA 74135 >seq1348 Length=186066 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 199782 CGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGAG 199840 ||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 96064 CGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGAA 96005 Query 199841 TCCTGTATCACCGACCACT 199859 |||| | || ||||||||| Sbjct 96004 TCCTCTCTCGCCGACCACT 95986 >seq911 Length=74078 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 199782 CGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGAG 199840 ||| || |||||||| |||||||||| ||||||||||||||| ||||| |||||||| Sbjct 20673 CGGCGAGTAGCGCAGCTTGGTAGCGCAACTGGTTTGGGACCAGTGGGTCGGAGGTTCGAA 20614 Query 199841 TCCTGTATCACCGACCACT 199859 |||| | || ||||||||| Sbjct 20613 TCCTCTCTCGCCGACCACT 20595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741398078520920