Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq911 232 2e-56 >seq911 Length=74078 Score = 232 bits (256), Expect = 2e-56 Identities = 528/791 (67%), Gaps = 10/791 (1%) Strand=Plus/Minus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGAT 45496 ||| |||||||||| | || ||||| | || | || |||| |||| |||| |||| Sbjct 47482 ATGCAACAATATCTGGCTTTAATGCAAAAAATTCTTGATGACGGTGTGGCGAAATCAGAT 47423 Query 45497 CGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGAC 45556 || || || ||||| || || | || || | ||| |||||||||| |||||| | Sbjct 47422 CGCACTGGGGTTGGCACTTTATCCATTTTTGGTCATCAAATGCGCTTTAATTTGCAGCAA 47363 Query 45557 GGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTC 45616 || || |||||||| || || ||||| | ||| | || || || ||| ||||| | || Sbjct 47362 GGCTTTCCGCTCGTCACCACAAAAAAATGTCATCTACGTTCTATTATTCATGAATTACTT 47303 Query 45617 TGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGG 45676 ||||||||||||||||| || ||| || ||| | || || ||| ||| || || ||| Sbjct 47302 TGGTTTTTAAAAGGCGAAACCAATATTGCTTATCTACATGACAATAATGTCACTATCTGG 47243 Query 45677 GACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCG 45736 || |||||||||||| ||||||| ||||| || || | || || |||||||| | Sbjct 47242 GATGAGTGGGCCGATAAAAACGGTGATCTAGGACCCGTTTATGGTAAACAATGGCGTGCT 47183 Query 45737 TGGAAAGGGGCTGACGGGAA--AACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCA 45794 ||| ||| || || || || |||| ||| |||||| | ||| || | |||||| Sbjct 47182 TGGCAAGCAGCGGATGGTAAGCAACG--CGATCAAATTAGTGAGGTGATTGAACAAATCA 47125 Query 45795 AGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGG 45854 | || || | || || || || | || || ||||| || | | || | | | Sbjct 47124 AAACTAATCCCGATTCACGTCGTTTAATCGTATCAGCTTGGAATGTCGGAGAGCTCGAGC 47065 Query 45855 AAATGAAGTTGCCCCCATGTCATTACGC---CTTTCAGTTTTACGTCGCGAATGGCCGGT 45911 | ||| ||| | ||||| | |||| ||| |||||||| || ||| | ||| Sbjct 47064 AGATGGCTTTGGCGCCATGCC---ACGCTTTCTTCCAGTTTTATGTGGCGGACGGCAAAC 47008 Query 45912 TGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCG 45971 |||| ||| | | |||||||| |||| ||| |||| | || ||||| || | Sbjct 47007 TGTCTTGCCAGCTTTATCAGCGTTCATGCGATGTGTTTTTAGGCCTACCTTTTAATATTG 46948 Query 45972 CTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGAAC 46031 ||||||| || |||| ||||||| | || || ||||| || | | || ||||| Sbjct 46947 CTAGCTACGCTTTGTTAGTACATATGATAGCGCAGCAATGTGATTTGGCGGTAGGCGATT 46888 Query 46032 TCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGC 46091 | ||| || || || || |||| | || || ||| |||||||| | | | | Sbjct 46887 TTGTTTGGACTGGTGGTGATACCCATCTTTATGCCAACCATATGGAACAAACACATTTAC 46828 Query 46092 AGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTA 46151 | ||| || ||| ||| | || || ||| | ||||| || || || || || | Sbjct 46827 AATTGAGTCGTACGCCACGCGCACTCCCTAAGTTAGTGATTAAGCGCAAACCAAATTCGA 46768 Query 46152 TCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGATTA 46211 | ||||| || | || || ||||| | | | |||||| ||| | || || |||| Sbjct 46767 TTTTTGATTACTGTTTTGAAGACTTTGAGATCGAGGACTATGATCCGTATCCTGCCATTA 46708 Query 46212 AGGCTCCTGTA 46222 |||| || ||| Sbjct 46707 AGGCACCGGTA 46697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157739986403126