Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq2372 181 1e-40 seq916 120 3e-22 >seq2372 Length=84335 Score = 181 bits (200), Expect = 1e-40 Identities = 358/520 (69%), Gaps = 20/520 (4%) Strand=Plus/Plus Query 146508 AGGACTGAACAACGTGATGTAATCGTTTTTAATCAATCGTTCAATCATGAGGTCGTTAAT 146567 ||| || |||| || ||| | ||||||||||| || || | ||| | | ||||| Sbjct 73646 AGGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAAT 73705 Query 146568 TTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAA---CACCTTTATTGTTCTT 146624 ||| || |||||||||| ||||| | || ||||| |||| ||| |||||| | | Sbjct 73706 TTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTG--CGT 73763 Query 146625 CAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCACC 146684 || || | | |||||||||||| | |||||| | ||||||| | | || || || || Sbjct 73764 -AGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCC 73822 Query 146685 GCCACGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCT---AAGTGAGTTTTCCAGAA 146741 || || | |||||||||||||| ||||| |||| | | |||| | || | | || Sbjct 73823 CCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGT-ACTTAT--AAAA 73879 Query 146742 TGGAATAACGCCTGTATG--ACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGA 146799 ||||||| || ||||| ||| |||| ||| ||| ||| | ||| ||||| Sbjct 73880 TGGAATACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCCTAAGGCACGG 73937 Query 146800 TACATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTT 146857 | | || ||||||| ||||| || || |||| ||||| ||||| | || || Sbjct 73938 ATCTTACCGGCATTAATGCCAATTCCAGCGCGTT--GTGATACGTATTTAACAATAGCGC 73995 Query 146858 TGTTTACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGA 146917 | || ||||| |||||||||||| | | ||||| | || || ||||| | Sbjct 73996 TCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAA 74055 Query 146918 ACTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTT 146977 |||||||||| ||||| || || || ||||||||||| ||||| || ||||| | | Sbjct 74056 ACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGG 74115 Query 146978 TAGATACGGCATTATAGAAACGGATAATATGCTTAAGACG 147017 | || | |||| ||| ||||| |||| | || ||||| Sbjct 74116 TGGAAATCGCATCATAAAAACGTTTAATGTAATTGAGACG 74155 >seq916 Length=289624 Score = 120 bits (132), Expect = 3e-22 Identities = 74/79 (94%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 74902 TGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAACC 74961 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 161546 TGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTGACC 161605 Query 74962 ATCTGAGCTAAAGGGCCTT 74980 | ||||||||| ||||||| Sbjct 161606 AACTGAGCTAAGGGGCCTT 161624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540023272525160