Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019919.2 Length=122696 Score E Sequences producing significant alignments: (Bits) Value seq3910 131 1e-25 >seq3910 Length=82658 Score = 131 bits (144), Expect = 1e-25 Identities = 403/613 (66%), Gaps = 14/613 (2%) Strand=Plus/Plus Query 38285 ATCAATGTATACTGTACGACCTTCCGGGAACTGATTTGGAAACTCTTTCTTCATCTCCTC 38344 |||||| || | ||||||||||| || |||||||||||| | ||| | | | | | Sbjct 19217 ATCAATATAGAGAGTACGACCTTCAGGCAACTGATTTGGATATTCTGCCAATAACGCATT 19276 Query 38345 AAACAATTCGGAAGTAATGGAACGATCGGAGTTAATACGAAGCCCATCATCTACCCACTT 38404 ||| || | || | |||||||| ||||| | || | |||||||||||||| || Sbjct 19277 AAATAAAGGCGTGGTTTTAGAACGATCAGAGTTTACGCGTAAACCATCATCTACCCATTT 19336 Query 38405 AACAGTAGGGGCTAAAACTATAACTAGATCGTAGTGCTCATCCTTAGCCATAGCTGTTAT 38464 || || || |||||| || || |||||||| ||||| | || || |||| | Sbjct 19337 TACTGTTGGCGCTAAATAAATCACATAATCGTAGTTCTCATTATGGGCAATTGCTGAGAC 19396 Query 38465 AACAGGGT---TAGAGCGATGTTCATAGAGTCGGTGATAGAACTCTGTGATAAAAGCATT 38521 || || | || ||| |||||| | |||||||| | || ||||| |||||||| Sbjct 19397 AATTGGATTACTATAGC---CTTCATATAAACGGTGATAATATTCAGTGATGAAAGCATT 19453 Query 38522 GGTATCAACAAACATAATCTTATTTGCAGTACGTTCA--GCTTCAAACTCTAGCTCTTTG 38579 ||||||| ||| | ||| ||||| ||| | | |||| ||||| || |||||||| Sbjct 19454 TGTATCAATAAAAACAATTTTATTGGCA-TGC-TTCAGCGCTTCTTCTTCAAGCTCTTTA 19511 Query 38580 TGGCGGAATGCAATTTTATTATAATCCCCACTAGTCA-GTAGCCATTCGTTACCAACCAT 38638 | || | ||||||||| ||||| ||| ||| |||| | || | |||| | Sbjct 19512 TTACGATAAGCAATTTTAGCGTAATCATAACT-TTCATATAGCGACTCATCCCCAAATAA 19570 Query 38639 ATCTACTTCACAGTATGTACGGCCGTACTCCTCTACCCACGAAGTGTTGTATAGCTTCGC 38698 || ||| | || || | || ||||| || ||| || || | || || | Sbjct 19571 TACTCGTTCCGAATACGTTCTACCATACTCTTCGGTCCAACTGGTATTAAACAGTTTACC 19630 Query 38699 AAGGTATTTTGTTAAAGTAGTCTTTCCCGAGCTTTC-AGTCCCAATGATCACAACCTTAC 38757 ||| ||| | || | || || | |||||| |||| | | | || | || | Sbjct 19631 AAGCATCATTGCCATGGTTGATTTACCTGTGCTTTCTTGTCCAATTAAACAGACGCTAAT 19690 Query 38758 GAACATAGTCTTTACGAACTACACTAGGAAGAAATTCCCAGTACTTCATAAGATCGTTAC 38817 | ||||||||||| || | | ||||| | | ||||| || || || || |||| Sbjct 19691 G-GTGTAGTCTTTACGCACAATAGAAGGAATATAATCCCAATATTTATAAATATTTTTAC 19749 Query 38818 GAATCATGGTAGCCGAGATTGGAACACGGGTACGTTCTGCATCAACTACAATATGGTTAA 38877 | | ||| | || ||||| || || || ||||||| || |||||| || | | || ||| Sbjct 19750 GTACCATATTGGCTGAGATAGGCACTCGAGTACGTTGTGAATCAACCACGACAGGGGTAA 19809 Query 38878 AGTGAGGGAGATA 38890 | ||| | ||| Sbjct 19810 TCTCAGGAATATA 19822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392475807839743